RNA id: TU321834


Basic Information

Item Value
RNA id TU321834
length 243
lncRNA type intronic
GC content 0.42
exon number 1
gene id G283951
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 379916 ~ 380158 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACTACGCCCTAAAAGTATGTACTCTTTTTGTGAACAAAAAGTACATACTTTTGAGTGTGTAGCAAAAGAGTAGACAAGCTTTGGGACATACTATCACGTCATACAATTGCGTCTTTGCTCTCTGTCGCATCCTGTCACCGTAAACTGGCCTGTCAATCATCTTACATCCTCCACCACATTTCATTTAGTTAATTTCCTACCGTATCGGAGAGAAATGCAGTAGCACGTTGATCTGCAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321804 lncRNA upstream 79590 298283 ~ 300326 (+) True G283925
TU321777 lncRNA upstream 104423 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321774 lncRNA upstream 117085 262612 ~ 262831 (+) True G283903
TU321652 lncRNA upstream 136007 240653 ~ 243909 (+) True G283797
TU321648 lncRNA upstream 157878 221802 ~ 222038 (+) True G283793
TU321806 lncRNA downstream 260271 640429 ~ 642060 (+) True G283927
TU322027 lncRNA downstream 265513 645671 ~ 646059 (+) True G284111
TU322033 lncRNA downstream 282435 662593 ~ 662875 (+) True G284117
TU322037 lncRNA downstream 287615 667773 ~ 668011 (+) True G284121
TU322231 lncRNA downstream 365564 745722 ~ 745972 (+) True G284296
CI01000072_00338411_00351144.mRNA mRNA upstream 28640 337071 ~ 351276 (+) False CI01000072_00338411_00351144
CI01000072_00315525_00322937.mRNA mRNA upstream 56847 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00295802_00308710.mRNA mRNA upstream 70359 295201 ~ 309557 (+) True CI01000072_00295802_00308710
CI01000072_00275132_00275592.mRNA mRNA upstream 102648 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00245767_00246460.mRNA mRNA upstream 133235 244444 ~ 246681 (+) True CI01000072_00245767_00246460
CI01000072_00400359_00403220.mRNA mRNA downstream 19658 399816 ~ 403514 (+) True CI01000072_00400359_00403220
CI01000072_00404877_00406183.mRNA mRNA downstream 24719 404877 ~ 407092 (+) True CI01000072_00404877_00406183
CI01000072_00441183_00448301.mRNA mRNA downstream 60468 440626 ~ 448472 (+) True CI01000072_00441183_00448301
CI01000072_00453946_00487772.mRNA mRNA downstream 73583 453741 ~ 488634 (+) True CI01000072_00453946_00487772
CI01000072_00603805_00621584.mRNA mRNA downstream 222484 602642 ~ 621833 (+) True CI01000072_00603805_00621584
TU321805 other upstream 28628 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1601372 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3590099 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3788946 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3788946 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3844680 4232318 ~ 4232421 (+) False G286474

Expression Profile