RNA id: TU322231


Basic Information

Item Value
RNA id TU322231
length 251
lncRNA type intronic
GC content 0.38
exon number 1
gene id G284296
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 745722 ~ 745972 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACAATGCGCTGCCCACAAGGCTATTGCTCCTACATAACAGCTTATTTTTATCTGTTCTTTTGTCTTTGGGTTGTTATATTTCTCACAGGTTTCTGCTCGTTCTAAATCAGGTACAGATTAAGTAGCACAGTAAGATTACCTGTATTTGAATGCATTAGTGAGAGAGCGTGTGTGAATTAATTCTACCTAGCAGCCTCTCTCTACTTATTAACTAAAACCCACAGCTTCACTATGAGAAATATATGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322037 lncRNA upstream 77711 667773 ~ 668011 (+) True G284121
TU322033 lncRNA upstream 82847 662593 ~ 662875 (+) True G284117
TU322027 lncRNA upstream 99663 645671 ~ 646059 (+) True G284111
TU321806 lncRNA upstream 103662 640429 ~ 642060 (+) True G283927
TU321834 lncRNA upstream 365564 379916 ~ 380158 (+) True G283951
TU322279 lncRNA downstream 109558 855530 ~ 855877 (+) True G284338
TU322243 lncRNA downstream 120938 866910 ~ 867085 (+) False G284306
TU322244 lncRNA downstream 120938 866910 ~ 867085 (+) True G284306
TU322426 lncRNA downstream 322548 1068520 ~ 1069158 (+) True G284464
TU322515 lncRNA downstream 587504 1333476 ~ 1333715 (+) True G284550
CI01000072_00629638_00638277.mRNA mRNA upstream 106371 629638 ~ 639351 (+) True CI01000072_00629638_00638277
CI01000072_00603805_00621584.mRNA mRNA upstream 123889 602642 ~ 621833 (+) True CI01000072_00603805_00621584
CI01000072_00453946_00487772.mRNA mRNA upstream 257088 453741 ~ 488634 (+) True CI01000072_00453946_00487772
CI01000072_00441183_00448301.mRNA mRNA upstream 297250 440626 ~ 448472 (+) True CI01000072_00441183_00448301
CI01000072_00404877_00406183.mRNA mRNA upstream 338630 404877 ~ 407092 (+) True CI01000072_00404877_00406183
CI01000072_00760940_00797319.mRNA mRNA downstream 14968 760940 ~ 797319 (+) True CI01000072_00760940_00797319
CI01000072_00847890_00857227.mRNA mRNA downstream 101227 847199 ~ 857899 (+) True CI01000072_00847890_00857227
CI01000072_00873737_00876816.mRNA mRNA downstream 127765 873737 ~ 876902 (+) False CI01000072_00873737_00876816
CI01000072_01119954_01120757.mRNA mRNA downstream 373331 1119303 ~ 1120844 (+) True CI01000072_01119954_01120757
CI01000072_01145519_01157117.mRNA mRNA downstream 399547 1145519 ~ 1157875 (+) True CI01000072_01145519_01157117
TU321805 other upstream 394434 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1235558 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3224285 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3423132 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3423132 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3478866 4232318 ~ 4232421 (+) False G286474

Expression Profile