RNA id: CI01000072_00847890_00857227.mRNA



Basic Information


Item Value
RNA id CI01000072_00847890_00857227.mRNA
length 1801
RNA type mRNA
GC content 0.35
exon number 3
gene id CI01000072_00847890_00857227
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 847199 ~ 857899 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATATAAATGAGATAACTATATGCAGTGTATACAGCTTGTTAGTATTCATGACATCAAACATCATGAAATATTAATATGGCAATTCTGGCTGTTCAGTTACAGAGGGCTAGATAAATTGCCTCTCCGTCATTGGACTAATGCAGCACTGATCAGTGGGATAAACCATCTAACCACAGATGGTTTGGTTTTGCCTTTGACACAAAGTATGGCCTACAAATATATTTAGTCCTGAACATTTCTTGAACAGGCCTTTTTTCAACACACAAAGAAATACTGAATGTCCAATTAAGGAAAAGTGACTATGTCTGATTAAGCTGTGGTTGGATCAAGTCTGATGCATTTCTAATCACTCATTTTGGTTGGTTGTGGTATTTTATGTAATTGAAAACATTTGAAAATGGTCTGGTCACATTCCTTTTTGATCTTATTAAGTTATCAAAAGTTATAATGCAAGAACTGTTACAAAAGATTTTTTTAGCCTAAATGGTCAAGATTAATTTACATGACAGATGTGCTCTAGCTAACTTTACCATTCTAAACTGATCATTTATAAATGTATTAATTTTGCCTCAAATCAACTTTTTTTTTGCTTTTTCATCAAAACATGTTGTACTCTTACACAAGTAGAGTTATTTGTGACATTTTAACCTGAGAGGTAAAAGAAAATAGTCTGGAAATGACCAAAAAATGGCCTACTTTGGGCCATATACTCTAACTCTGGTCATACAGTCACATGGTGGCATTTCATCATCAAAAACAGACCGTTTATACACAGGCTTTGGTGTAGAACAAAACATCGACCAGAGGCTGTCATCGAGTAAAGGATCTGAGCTAGCGAGTAGACGAGTACAGGTCAGGCACACAAATCCCTCTTTAACTTCATCTATTGTAGTGGGATTTTGGAGACGCCTGTTGCCTGAGCCGCTCTGCTTATCTACTCATTACGGCTCAACAGCTAAACTATGTTCTGGGCGCGCTCAGACCATTAGTGGTCGGTGCCAAAAAGAGCACAACATTTCTGGGTCGTTGAAAGAGAATGAAGGAAAGGAGGTGGAGAAAGTGGAGCATAGTTCTGCTTCCGAGTCAAGCTTTGTCTATAAATACTCGTACATTGCAGTTCTATGACTATAAATAGGCTTAAATCAACACAATAGGTGGTATTGTACTCCACAGGAAACACTGGAAACGATAAAGGATTCCAATTTAGACCTCTGGTCTTTCTACCATTGTGTAGTCTATTTATTATTATTATTATTATTATTATTATTATTATTAGATTATAAGTCAGTCACGGTGTACATTTTCACCTGGCGCTAAATAGACGTAGCGAACATAAATCGCGTTCGCTCTTAAGGTAACCATAGCAACAGTACTTTTTGTAAGGGTCATCAGAGAGAATATTAACAAACGTTATAACACTGTCATTATTTAATTTCGTTATGGAATTATCACAAATATATCACTCACACACACACACACACACACACACACACACACACACACACACAAAAAAAACGTTTGTGTTTTGTCTACAAAGATAGCAAACTAAAAGTCAAAAAGACAGCTCGGGTTTCGATGACGTTCTAAAATTTCCAGATAGTTGTAATTCGCACACATTTATTATTACCTATTCTTATTATTATTATTACTATTATTACAGAGTAGATTATAGAGAATTGTGTTGTTGTTGCCATTTTCTGCTATTTCTATTAATATTTGTTATTTATTTTAGGCCTGTATGTGTTGTATTTGTGTTTTTACAATATAGTGGCCAACCCTTTTTCATATAAAATAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322231 lncRNA upstream 101227 745722 ~ 745972 (+) True G284296
TU322037 lncRNA upstream 179188 667773 ~ 668011 (+) True G284121
TU322033 lncRNA upstream 184324 662593 ~ 662875 (+) True G284117
TU322027 lncRNA upstream 201140 645671 ~ 646059 (+) True G284111
TU321806 lncRNA upstream 205139 640429 ~ 642060 (+) True G283927
TU322243 lncRNA downstream 9011 866910 ~ 867085 (+) False G284306
TU322244 lncRNA downstream 9011 866910 ~ 867085 (+) True G284306
TU322426 lncRNA downstream 210621 1068520 ~ 1069158 (+) True G284464
TU322515 lncRNA downstream 475577 1333476 ~ 1333715 (+) True G284550
TU322524 lncRNA downstream 523844 1381743 ~ 1442788 (+) True G284559
CI01000072_00760940_00797319.mRNA mRNA upstream 49880 760940 ~ 797319 (+) True CI01000072_00760940_00797319
CI01000072_00629638_00638277.mRNA mRNA upstream 207848 629638 ~ 639351 (+) True CI01000072_00629638_00638277
CI01000072_00603805_00621584.mRNA mRNA upstream 225366 602642 ~ 621833 (+) True CI01000072_00603805_00621584
CI01000072_00453946_00487772.mRNA mRNA upstream 358565 453741 ~ 488634 (+) True CI01000072_00453946_00487772
CI01000072_00441183_00448301.mRNA mRNA upstream 398727 440626 ~ 448472 (+) True CI01000072_00441183_00448301
CI01000072_00873737_00876816.mRNA mRNA downstream 15838 873737 ~ 876902 (+) False CI01000072_00873737_00876816
CI01000072_01119954_01120757.mRNA mRNA downstream 261404 1119303 ~ 1120844 (+) True CI01000072_01119954_01120757
CI01000072_01145519_01157117.mRNA mRNA downstream 287620 1145519 ~ 1157875 (+) True CI01000072_01145519_01157117
CI01000072_01163522_01163779.mRNA mRNA downstream 305109 1163008 ~ 1163959 (+) True CI01000072_01163522_01163779
CI01000072_01183833_01210925.mRNA mRNA downstream 325640 1183539 ~ 1212212 (+) True CI01000072_01183833_01210925
TU321805 other upstream 495911 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1123631 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3112358 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3311205 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3311205 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3366939 4232318 ~ 4232421 (+) False G286474

Expression Profile