RNA id: CI01000072_01163522_01163779.mRNA


Basic Information

Item Value
RNA id CI01000072_01163522_01163779.mRNA
length 952
RNA type mRNA
GC content 0.40
exon number 1
gene id CI01000072_01163522_01163779
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1163008 ~ 1163959 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATAAGGTAAGTTACGGTAACTGATTTTTCATTGTAGCATTTTCCAATGAACATACTTTATTGAAAATGAAAATTAAATCAGTCAGCAATTGAATGTACTAATATACTGTACTATTCAATATAAAAAAAATTGTTAAACATTTTATTAAATCTATAACAAAACTAGTACTGCCTTAATCACTTTTCATTACAAAAATAGTATTTACAAGGCTTGTTATATAATATGCATTTCCTAATGACATTTTGTTTGAGTAATAAGGTCATAATTTCTGCAAAGACCTTTTGGATAATTAAATATTCTCTATAAGAGATAAAGGACGGTAAACTCCGCCCAGTGTTCATTTAAAACTAGTGTGCATCTCTGAAACACTCTGACGGTGCAGAGGACACTCATCCCTCAGAGAAGTGCAGGAATCTGGTCACCTGAATCGGGATTCACGGCAGATTTCTCAAAGCCTCAGACGAACAAACAGTGACCGCTGGAACTAACACGGATATCAGTCATCTCAGAATGAGAGGAGACAAACCCGTTCGGACAAACGGAGGTGCGGAGACTCGAAGACCGAGTTACCCCGGAGACCAGAGGGTGAAACACGCCAAAAGAGCCACGAAGATTTGGGTGAAAGTGGCGATGGGTATCGCTTACTTTCTGTGTGTTTCAGTCGCAGCTTTCTTCTTAGCCATCTACTATGTGTTCTTCTGGACACCAGATCTATCCAGTCAGAACAACGTCATGAATACAACAAACCGCTCGTGCCATCCGGGATAGTTTACATGGACAGAGACGTGCGGCGCAGGATTCACCCGCATGTACCTGAAGGGAGCTGTTACAGCTATTTCCAATGCACTATGCAAACTGTCCCAACACTGCACATTTATCAGTGCGGATATCCTTCCTCTACTCTGACTTTGCTTATTTGAAATGGACGACTGATAAACTTAAATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322426 lncRNA upstream 93850 1068520 ~ 1069158 (+) True G284464
TU322243 lncRNA upstream 288612 866910 ~ 867085 (+) False G284306
TU322244 lncRNA upstream 288612 866910 ~ 867085 (+) True G284306
TU322279 lncRNA upstream 307131 855530 ~ 855877 (+) True G284338
TU322231 lncRNA upstream 417036 745722 ~ 745972 (+) True G284296
TU322515 lncRNA downstream 169517 1333476 ~ 1333715 (+) True G284550
TU322524 lncRNA downstream 217784 1381743 ~ 1442788 (+) True G284559
TU322663 lncRNA downstream 423192 1587151 ~ 1590509 (+) True G284696
TU322660 lncRNA downstream 492893 1656852 ~ 1696292 (+) True G284694
TU322826 lncRNA downstream 667709 1831668 ~ 1831971 (+) True G284851
CI01000072_01145519_01157117.mRNA mRNA upstream 5133 1145519 ~ 1157875 (+) True CI01000072_01145519_01157117
CI01000072_01119954_01120757.mRNA mRNA upstream 42164 1119303 ~ 1120844 (+) True CI01000072_01119954_01120757
CI01000072_00873737_00876816.mRNA mRNA upstream 286106 873737 ~ 876902 (+) False CI01000072_00873737_00876816
CI01000072_00847890_00857227.mRNA mRNA upstream 305109 847199 ~ 857899 (+) True CI01000072_00847890_00857227
CI01000072_00760940_00797319.mRNA mRNA upstream 365689 760940 ~ 797319 (+) True CI01000072_00760940_00797319
CI01000072_01183833_01210925.mRNA mRNA downstream 19580 1183539 ~ 1212212 (+) True CI01000072_01183833_01210925
CI01000072_01238939_01264489.mRNA mRNA downstream 74470 1238429 ~ 1265465 (+) True CI01000072_01238939_01264489
CI01000072_01272628_01318779.mRNA mRNA downstream 108571 1272530 ~ 1319079 (+) True CI01000072_01272628_01318779
CI01000072_01334982_01348258.mRNA mRNA downstream 171023 1334982 ~ 1348258 (+) True CI01000072_01334982_01348258
CI01000072_01351729_01362820.mRNA mRNA downstream 186513 1350472 ~ 1363039 (+) True CI01000072_01351729_01362820
TU321805 other upstream 811720 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 817571 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 2806298 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3005145 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3005145 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3060879 4232318 ~ 4232421 (+) False G286474

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU157685 True 1181 lncRNA 0.39 2 NC_056713.1 14653296 ~ 14671494 (+)