RNA id: TU322826


Basic Information

Item Value
RNA id TU322826
length 304
lncRNA type intronic
GC content 0.38
exon number 1
gene id G284851
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1831668 ~ 1831971 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTAAGGCAACGTATATTACACAATACAGATATATATCATAGTTATATTTAACCCGTCCGTTATTGCTGTGGAAAGAATCGCGCTTTTTCATGGCCTGTTGAAAGTACCTTGTTGATGCTTAAATGTCCTTTTAATTTTCGTTGGTTGAAGGGTGAGTAGAATAATGTCATCTCATTGTACCCATTTTAAAAATAAAACGTATTATTGCGTTCATAAAGCGAGCCTTTCACTGACTGTTTACAGCTTAACGGAAGTTACACCCATAATTCGCGCAAAGCGTCATGGGGCGTCGGAATAAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322660 lncRNA upstream 135376 1656852 ~ 1696292 (+) True G284694
TU322663 lncRNA upstream 241159 1587151 ~ 1590509 (+) True G284696
TU322524 lncRNA upstream 388880 1381743 ~ 1442788 (+) True G284559
TU322515 lncRNA upstream 497953 1333476 ~ 1333715 (+) True G284550
TU322426 lncRNA upstream 762510 1068520 ~ 1069158 (+) True G284464
TU322834 lncRNA downstream 48619 1880590 ~ 1880807 (+) True G284859
TU322845 lncRNA downstream 77165 1909136 ~ 1909363 (+) True G284867
TU322847 lncRNA downstream 79041 1911012 ~ 1911361 (+) True G284869
TU322849 lncRNA downstream 82024 1913995 ~ 1914302 (+) True G284871
TU322767 lncRNA downstream 84924 1916895 ~ 1919833 (+) True G284793
CI01000072_01762899_01783522.mRNA mRNA upstream 47708 1762567 ~ 1783960 (+) True CI01000072_01762899_01783522
CI01000072_01724644_01730223.mRNA mRNA upstream 100508 1724452 ~ 1731160 (+) True CI01000072_01724644_01730223
CI01000072_01413987_01424254.mRNA mRNA upstream 407414 1413987 ~ 1424254 (+) True CI01000072_01413987_01424254
CI01000072_01406735_01412673.mRNA mRNA upstream 418548 1406735 ~ 1413120 (+) True CI01000072_01406735_01412673
CI01000072_01391395_01404483.mRNA mRNA upstream 425595 1389526 ~ 1406073 (+) True CI01000072_01391395_01404483
CI01000072_01864149_01879788.mRNA mRNA downstream 31940 1863911 ~ 1880204 (+) True CI01000072_01864149_01879788
CI01000072_02000581_02009243.mRNA mRNA downstream 167669 1999640 ~ 2009426 (+) True CI01000072_02000581_02009243
CI01000072_02016536_02023336.mRNA mRNA downstream 184451 2016422 ~ 2023361 (+) True CI01000072_02016536_02023336
CI01000072_02028275_02032319.mRNA mRNA downstream 195905 2027876 ~ 2032703 (+) True CI01000072_02028275_02032319
CI01000072_02033013_02040077.mRNA mRNA downstream 201006 2032977 ~ 2040725 (+) True CI01000072_02033013_02040077
TU321805 other upstream 1480380 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 149559 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 2138286 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 2337133 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 2337133 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 2392867 4232318 ~ 4232421 (+) False G286474

Expression Profile