RNA id: TU322847


Basic Information

Item Value
RNA id TU322847
length 350
lncRNA type intronic
GC content 0.33
exon number 1
gene id G284869
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1911012 ~ 1911361 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGTGACAAGAAACTGATAAACCAGTTAAATGCAGCCTGTAAAGTTACAATGACTCACTTCAATCTCACCTGATTCGTCGCTTCACATTTAGACTACTTGTTAGTTTTATGGACTACTATGTTTCTGTCATTACAATAATTGGGTCAGTGACGTGACGGGTCATTTTTTTGTCCAAAGGCCTTAATAATAATAAAAAACAAAGATATGACATCCAAAGTATGTAAGGTAGTACAACTAGATCTCTTTTATTGAATCCAAAAGGTTTCAATTATATTTTGCTACATATAAAGGCATTTTAAAGATTTTGAAGTGTCAAAAGTGTCATTCGGTTTAACCATCCAAAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322845 lncRNA upstream 1649 1909136 ~ 1909363 (+) True G284867
TU322834 lncRNA upstream 30205 1880590 ~ 1880807 (+) True G284859
TU322826 lncRNA upstream 79041 1831668 ~ 1831971 (+) True G284851
TU322660 lncRNA upstream 214720 1656852 ~ 1696292 (+) True G284694
TU322663 lncRNA upstream 320503 1587151 ~ 1590509 (+) True G284696
TU322849 lncRNA downstream 2634 1913995 ~ 1914302 (+) True G284871
TU322767 lncRNA downstream 5534 1916895 ~ 1919833 (+) True G284793
TU322770 lncRNA downstream 9622 1920983 ~ 1922486 (+) True G284796
TU322850 lncRNA downstream 11892 1923253 ~ 1923565 (+) True G284872
TU322851 lncRNA downstream 12751 1924112 ~ 1925189 (+) True G284873
CI01000072_01864149_01879788.mRNA mRNA upstream 30808 1863911 ~ 1880204 (+) True CI01000072_01864149_01879788
CI01000072_01762899_01783522.mRNA mRNA upstream 127052 1762567 ~ 1783960 (+) True CI01000072_01762899_01783522
CI01000072_01724644_01730223.mRNA mRNA upstream 179852 1724452 ~ 1731160 (+) True CI01000072_01724644_01730223
CI01000072_01413987_01424254.mRNA mRNA upstream 486758 1413987 ~ 1424254 (+) True CI01000072_01413987_01424254
CI01000072_01406735_01412673.mRNA mRNA upstream 497892 1406735 ~ 1413120 (+) True CI01000072_01406735_01412673
CI01000072_02000581_02009243.mRNA mRNA downstream 88279 1999640 ~ 2009426 (+) True CI01000072_02000581_02009243
CI01000072_02016536_02023336.mRNA mRNA downstream 105061 2016422 ~ 2023361 (+) True CI01000072_02016536_02023336
CI01000072_02028275_02032319.mRNA mRNA downstream 116515 2027876 ~ 2032703 (+) True CI01000072_02028275_02032319
CI01000072_02033013_02040077.mRNA mRNA downstream 121616 2032977 ~ 2040725 (+) True CI01000072_02033013_02040077
CI01000072_02058184_02067046.mRNA mRNA downstream 146526 2057887 ~ 2067049 (+) True CI01000072_02058184_02067046
TU321805 other upstream 1559724 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 70169 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 2058896 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 2257743 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 2257743 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 2313477 4232318 ~ 4232421 (+) False G286474

Expression Profile