RNA id: TU322663


Basic Information

Item Value
RNA id TU322663
length 3325
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G284696
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1587151 ~ 1590509 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCGTTTTCAACATTCACAGCTCTGCTTGATTTTTAACATAGACACTCATTCCCACTACTGCTACAACTATAATTACAATTAGTGTGAGTGTGTATTGCTTTTATGCAACAGTTCACTAAACAAAGAAAGTAATACTGAGTACAGGAATTTTTAGACATAAAAATACATAGTATAGTGAATCAGTATAGTGAATCAGGCTCGAACATAGTATAGTGAATCAGGCTCGAACAGCTCCCCCTCCAGCCCACGAGCCTCTTGGTTCATTGGGGACAGAGCCAAGTTAAACTCGCCCACTGAACTTGACACAAGATTGTAATCTTGACACAAGATTACTTTGTCTAATGTTTGCTCAGCCATAGCCATAGAAAATAGTTCTAAACAAAACCACAGCAATCTCACATTGTTATTTTAGTATTATTTGTATGCTATTATATTATTTAATGACATTTTTTAGTTTTATTTTCATTTCAATTTTAAAAGTAAATGATTCAATGACTCGCTCATAAAGACAGTAGCTGAATTTGGAATAGAGATTAACATGTTAATGTAATCTCTCTGGTTTTATTCGCACCGCTCCTAACTGGATTCGAACTAGTGTTTCCGGGCATGGGAGGTGGCGCACTAACAAGGACGCTAAAGTCCGCAGTCTCTAGCTTCAGTTGCTAGTGCACCACTTGAGTCCAGAGGAGTGAGGTTTACTCACACAGCTCTTACTAGTTGGCCTCCATTACACTCACCCCCCTAAACCTCATTCCCATCCAGGTCACGGCACCAATGTAACCCCTCCGGTTCTACTCGCACTTCACCGAGCTGGATTTGAACCAGCATTCCAGCATGGGAAGTGGACGCACTAACAAGGACGCTAAAGACAGCAGCCTTGCTAGTGCACCTCTTATAGCCAGGGGAGTGAGGTGTCTTACTAGCTGGCCTCCATTACACTTAACCCCCTAAACCTCACTCCCATCTGGGTCACGGCACCAATGTAACCCCTCCGGTTCTACTCGCACTTATCCGAGCTGGATTCGAACAAGCATTCCAGCATGGGAAGTGGACGCACTAACAAGGACACTAAAGACAGCAGCCTTGCTAGTGCACTTCTTAAGACCAGGGGAGTGAGGTTTCTTACTAGCTGGCCTCCATTACACTTAACCCCCCAAACCTCACTCCCATCCGGGTCACGGCACCAATGTAACCCCTCCAGTTCTACTCACACTTATCCGAGCTGGATTCGAACCAGCATTCCAGCATGGGAAGTGGACGTACTAACAAGGACGCTAAAAACCGCAGCCTTGCTAGTGGACATCTTAAAGCCAGGGGAGTGAGTTTTTTTACTAGCTGGCCTCCATTACACTTAACCCCCCAAAACTCACTCCCATCTGGGTCACGGCACCAATGTAACTCCTCCGGTTCTACTCACACCGCTCCGGGCTGGATTCGAACCAGCATTCCAGCATGGGATGTGGACGCACTAACAAGGACACTAAAGACCGCAGCCTTGCTAGTGCACCTCTTAAAGCCAGGGGAGTGAGGTTTCTTACTAGCTGACCTCCGTTACACTCGACCCCACAAACTCCCACCCGGGTCACGGCACCAATGTAACCCGTCCAGTTCTACTCGACTGCTTCGAGCTGGATTCAAACCAGCGTTTCCATCATGGGAGGCGGGTGCACTAATGATGACGCTAAAGAACGCAGCATTCTGGTCACTAGTGCGCCTCTTGAGGCCAGGGGAGTGAGGTTTACTCGCACAGCTCTTAATAGCTGGATTCTGTTACACTAGGCTTACTATTTCTATATATCTATATTCGAATTGATCCAGTCACTTGCTTCATTCCTAAATAAATTGGTGTATATGAATGAATATTTTGTGTGAATCGGTCATTGAATCACTTAAGACTGTTAATTGTCACCACCTACTGGCTCATCAAAAAGTCACTCATCCCCACCACTAACGCACAGACTGACAGTCAAACGTGCAACAGACAAGTTGAGTGATATAAACAATAATAAGTCTTAGGAATGCTGCCCAGCCAGTCAAATTCAAGGAATGTTGTAACTACCTGTTTTAAAATATCTAAGTGTGGGTTTATTAACCACCAGTCTGTGGAGGACTTCTTTGAAGGACACTTTTCACTCTCTGCAAAGCTACTGAGGCTTATTTAAGTGTGTTTGCATATTTTGGTCTTGAATGAAAGTCCCTGGAAATTCCTGAGAAGTCAGCAGAGTTTTTTTTTTTTTGTGAAGCCCTCACTGTTTTAGCACAGCTACTGTAGGCACTTACCTGCTTACCTTGCGGCTGTGAAACAAGGTATTTAACAGGGGAAGGTCAGGTGTAAAATAGAGATCCGCCACACTGCGTGACGAACCTCTGATGAGGAAATTCATCAAAACCGTCACCGTGTCTGGCAGTTTCTTTTTTTCTTTTTTTTTCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACACAGACAATGTCAATTCTAGATGCCTTTTAAATGACGAGATTATTAAAATTACACATAGTGTTGCATACATGCTGGCACATGGTTGGCTAGTTTGCTTCTCAATCAAGGTATTTTTCCGTTCAGCAAAATCTTATCCGGGAAATCTTCATCTTGCAAGCTTTATTCCTGTTGATCATTACACATGAAGCACTTGTTTGCTTATGCTGCATATTTTAGGGCCCTGCATGCCTAACTTGACAAATGGCATTAATAAGTAGGAAGACAGGGTGCATTTCTTTGTTTTAGTTGTGTCATGTTTCAGATCTCTGATATTGTTTTTGCTCTGGCAAATGTTTCAAGTTATGAATCAATTACCTGCATGGGAGTCTCTATTGCATCTCATTGGAATGTAATAGAATGCTGGTTTTCACATGATGCCATTATTGCTGAAATATGAACGCATGTTAGTAAAAGCATGGCCATTTCTTTTACATTTCCATTCTATTACAGCTCACAGGGCCATAAGGCTAAGCAACATACCCTCAGGCCTGCATGAAATCAAACCTCACCTTTTACAAAATCATGTACTTATGACTAAAAAAAAAAAAAAAAACTACAGCCATTTATAACTGTCTTAGGTTGCCTGCTGATTCCAATCTGAAAGTTATGATTAGAATGACTCCCATTCCCATAAAAATGTACAGTATGGTCAAGTTGATACGGAGACACAGTAGTGAAAAAAAAATAAAAAATACGAGATGGAAAGAAAAATAATAAGTCAATACTTTTGCGTTCTCTCTCAAATGTTTTGCATTCCACCGAGAAACTTTGCGTTCGCTCGTAAAGCGTTCGGATTCCCCCAAGAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322524 lncRNA upstream 144363 1381743 ~ 1442788 (+) True G284559
TU322515 lncRNA upstream 253436 1333476 ~ 1333715 (+) True G284550
TU322426 lncRNA upstream 517993 1068520 ~ 1069158 (+) True G284464
TU322243 lncRNA upstream 712755 866910 ~ 867085 (+) False G284306
TU322244 lncRNA upstream 712755 866910 ~ 867085 (+) True G284306
TU322660 lncRNA downstream 66343 1656852 ~ 1696292 (+) True G284694
TU322826 lncRNA downstream 241159 1831668 ~ 1831971 (+) True G284851
TU322834 lncRNA downstream 290081 1880590 ~ 1880807 (+) True G284859
TU322845 lncRNA downstream 318627 1909136 ~ 1909363 (+) True G284867
TU322847 lncRNA downstream 320503 1911012 ~ 1911361 (+) True G284869
CI01000072_01413987_01424254.mRNA mRNA upstream 162897 1413987 ~ 1424254 (+) True CI01000072_01413987_01424254
CI01000072_01406735_01412673.mRNA mRNA upstream 174031 1406735 ~ 1413120 (+) True CI01000072_01406735_01412673
CI01000072_01391395_01404483.mRNA mRNA upstream 181078 1389526 ~ 1406073 (+) True CI01000072_01391395_01404483
CI01000072_01351729_01362820.mRNA mRNA upstream 224112 1350472 ~ 1363039 (+) True CI01000072_01351729_01362820
CI01000072_01334982_01348258.mRNA mRNA upstream 238893 1334982 ~ 1348258 (+) True CI01000072_01334982_01348258
CI01000072_01724644_01730223.mRNA mRNA downstream 133943 1724452 ~ 1731160 (+) True CI01000072_01724644_01730223
CI01000072_01762899_01783522.mRNA mRNA downstream 172058 1762567 ~ 1783960 (+) True CI01000072_01762899_01783522
CI01000072_01864149_01879788.mRNA mRNA downstream 273402 1863911 ~ 1880204 (+) True CI01000072_01864149_01879788
CI01000072_02000581_02009243.mRNA mRNA downstream 409131 1999640 ~ 2009426 (+) True CI01000072_02000581_02009243
CI01000072_02016536_02023336.mRNA mRNA downstream 425913 2016422 ~ 2023361 (+) True CI01000072_02016536_02023336
TU321805 other upstream 1235863 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 391021 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 2379748 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 2578595 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 2578595 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 2634329 4232318 ~ 4232421 (+) False G286474

Expression Profile