RNA id: TU322834


Basic Information

Item Value
RNA id TU322834
length 218
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G284859
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1880590 ~ 1880807 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCTCTGATTGGCCATTGTGTTGATGCGCTCATCGGATATGTCTGTGATTGGCTTCAATGATCAACGCTGTAAAAACATTGTAAATAATCAGCTTCACCAAGCGCTTACACAGATACACACGGGAGCAGGACCACTGATAGACGCCTGCTTTCAAACGCTCCCACTCCTGCTTTCATAACGCTTTCAAATTCAAACGCTCCCTTGCGTTGATCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322826 lncRNA upstream 48619 1831668 ~ 1831971 (+) True G284851
TU322660 lncRNA upstream 184298 1656852 ~ 1696292 (+) True G284694
TU322663 lncRNA upstream 290081 1587151 ~ 1590509 (+) True G284696
TU322524 lncRNA upstream 437802 1381743 ~ 1442788 (+) True G284559
TU322515 lncRNA upstream 546875 1333476 ~ 1333715 (+) True G284550
TU322845 lncRNA downstream 28329 1909136 ~ 1909363 (+) True G284867
TU322847 lncRNA downstream 30205 1911012 ~ 1911361 (+) True G284869
TU322849 lncRNA downstream 33188 1913995 ~ 1914302 (+) True G284871
TU322767 lncRNA downstream 36088 1916895 ~ 1919833 (+) True G284793
TU322770 lncRNA downstream 40176 1920983 ~ 1922486 (+) True G284796
CI01000072_01864149_01879788.mRNA mRNA upstream 386 1863911 ~ 1880204 (+) True CI01000072_01864149_01879788
CI01000072_01762899_01783522.mRNA mRNA upstream 96630 1762567 ~ 1783960 (+) True CI01000072_01762899_01783522
CI01000072_01724644_01730223.mRNA mRNA upstream 149430 1724452 ~ 1731160 (+) True CI01000072_01724644_01730223
CI01000072_01413987_01424254.mRNA mRNA upstream 456336 1413987 ~ 1424254 (+) True CI01000072_01413987_01424254
CI01000072_01406735_01412673.mRNA mRNA upstream 467470 1406735 ~ 1413120 (+) True CI01000072_01406735_01412673
CI01000072_02000581_02009243.mRNA mRNA downstream 118833 1999640 ~ 2009426 (+) True CI01000072_02000581_02009243
CI01000072_02016536_02023336.mRNA mRNA downstream 135615 2016422 ~ 2023361 (+) True CI01000072_02016536_02023336
CI01000072_02028275_02032319.mRNA mRNA downstream 147069 2027876 ~ 2032703 (+) True CI01000072_02028275_02032319
CI01000072_02033013_02040077.mRNA mRNA downstream 152170 2032977 ~ 2040725 (+) True CI01000072_02033013_02040077
CI01000072_02058184_02067046.mRNA mRNA downstream 177080 2057887 ~ 2067049 (+) True CI01000072_02058184_02067046
TU321805 other upstream 1529302 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 100723 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 2089450 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 2288297 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 2288297 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 2344031 4232318 ~ 4232421 (+) False G286474

Expression Profile