RNA id: TU322767



Basic Information


Item Value
RNA id TU322767
length 2939
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G284793
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1916895 ~ 1919833 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATGGAAAGATGTCAAGGGGATGTCAAAATTTATTCCCAGGGTCTTTAAGCGAAAGGTGGACAAGGAATGGAAAGGTGTCACTGGCTTCCAATTAATTTCTGGACAGTTCCAAATATGAGGATCAATGACATCAAATTGTGCCTTCTCCGAATAGCCAGTGCAATCAAGTCTGATCTCATCTCAGTGGACTGGAACATGTCCTATCCCAGAGAATGCAGACTTGGCATAGTTGTATCCATACAGTTGTTCCTGCTTGCCTGTGCAGGTCCTTCCAGGCCGGTCCTGATTTATGAACACCCCCTGAGCTCTCACTCCATCCTGGAGGGGCTCTCTGATTAGAGATGGAGAAGAGAAGGCGAGTGCAAACACTCATGCATCCACTCGCGCACCCCAGCATTTGGTTCTAATTACACACGGGGGGACTCCAGGGCCGGGTGTCATCTAGAACACGGAGCTAGATTTACACTTGACATGTTTTATTCACACAGGTTGGTCCTGGCCTGGTAATTGCAACATATTATCTGGGCCGATTCATCAAAGGGAGCAGCCTGCTACAGTAAACTCTTAAATGAACAACTCATATGGGTCACAGACGTGAAAAGTGGAGGGTTTTATTAGCAAAAAAAAAGAGTGAACCAACAAGTACAGTCCAAATGCTTTAGTAAAAGAGGTGTTTGTGAAATGTTTATGCCTTTTTTAGAAAAACTTGGAAATGGCCTCTGTTCTTGCAGAACAAGTTTGCGATTTGACCAGCCATAGTTTGGTGGCAGTATATTAAGTCATGTTTTAGTTGTCTAAAAGCCAAAATGTGCCACATCAGATGAGGGTATCCCCTCTGTTATGCTTGTTAGCCAAAGGCTACCCCTTGCTGCTTTAACAGGAGTGTTAATATGTGAAGCCAGTAAACACGCCAGTGGATTTGGAGACTTAAACATGCTGCCCTGCACTTGATGCACTGAAGGACTAATGCACAGAAATGTGAAACTGGGAAGAGATACAGTAAGTGCGTTCACATTAGGGTTGTGCACCATTCAGAACTGAACTGATTTTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGTTAAAAAGTATAACTCACAGGACAGGAGGACAGACACAGACAGACAGATAGATAGATAGATAGAATGACAGACAGACGGATAGATAGATAGACAAATAGAATGACAGACAGACGGATAGATAGATAGATAGATGGACGGACGGACAGAGGACAGACAGATAGATATATAGATAGATGAATGGATAGATAGATGCACACCGTACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAGAAAAGATGGACGGACGGACGGATAGATAAATAGAAAAGATAGATGGATGGAAGGAGGACAGACACAGATAGATAGATAGATAGATAAGATGGATGGATGGACGGACGGACGGAGGACAGACATAGATAGATAGATAGATGGATAGATAGAAAAGATGGACGGACGGATGGATAGATATATAGAAAAGATGGATGGATGGAAGGAGGATAGATAGATAGATAGATAGATAGACGGACGGAGGACAGACAGATAGATAGTTTTCATCTATCTATCTATCTATCTGTATCTGTTTCTAATCTATCTATCTATTTCTTATCTATCTATTTCTAATCTATCTATCTATCTATTTCTTCTATCTATCTATCTATCTATCTATCTGTATCTGTTTCTAATCTATCTATCTATTTCTTATCTATCTATCTATCTATCTATCTATCTATCTATTTCTAATCTATCTATCTATCTATTTCTTATCTATCTATCTATCTATTTCTTATCTATCTATCTATTTCTTATCTATCTATCTCATCTGACTCTATCTATCTATCTCCACTATACGTGAACCTTCTGCAGTACTCTAAACCTATTTTATGAGGGTGAAAGGAAAGTTCTTCAAATGCACCCCCTCTTACAGTCTAATCCTGCTGTAATGAGCTTGATTGCATTACATCTAGTGTCCGCCCCCCACGGCATTCTGCCCAAACCCCCCACAGAGCATGACATCAGAGTACAAGCTAAGGCCGGAAATGCGACAGGTCCCGCCACACGCAACATGCGAGATGCAACCTTCGACACGTACGATGCACACCGTGCCGCCGGGAAACACAGGGACACAGCGGCACGGGCTTGATGGACAAACCAGACCGGCACACACACATAGACACACATGTACATTCTTTCGAGAGGAAAATGGTAACAGTCAGTCCTGTGCAGTAAAATAGAATGGTGCACCTTCATTGTTCTGGCCTCTGGACTCTGGCCTCGCTTCCTGACACCTTCCGTTTGGGCTCGCACACAGATGGCCATGGATGTACAGGAGCAAGTGCGCCCACTCTGGCTGTCCAGACCCAAATAGAGAGGCATAGACGATTGTATATAGCCAAGAAGAGGTAAAGCACTTGTTGACCTGGTGTGTGTGCGGATGGTTGATGCTATTAGTGTAATAATGCCCCTAGCCTCGGATCGGACGAGTCCCATGTTATCCCATGCAGGGAGCTATCTATATCAGGGAAACTCATGGAGACGCTTAATGCGTGTGTTTTTATGTAAGTTTGTGAGGAGTCGCGGGGGTGTCACTGTCTGACAGGATGCATGGGTCAACTGTCTACGTGTGAGTGCAGCCGGGCCTGGGCCAACAGGTCAGGGTTGGGCTGCCCACAGGAAACGGCCAAGACATTCTGGCCCAGTGCTGGGGGACTTAACCCTTGCACTGCCAGCCTGGTCGCACTCTCACTGTTGCCGGAACTGAAACTCCCGACTCCAACTCTTTCCAACTGAACTTACAGTGTATAGTAAATGCTACATTTTGTTTCTGACATATGCTGTGTCAATATAGTTCATCCAAAAATGGAAATTCTGTCATCATTTACCCACCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322849 lncRNA upstream 2593 1913995 ~ 1914302 (+) True G284871
TU322847 lncRNA upstream 5534 1911012 ~ 1911361 (+) True G284869
TU322845 lncRNA upstream 7532 1909136 ~ 1909363 (+) True G284867
TU322834 lncRNA upstream 36088 1880590 ~ 1880807 (+) True G284859
TU322826 lncRNA upstream 84924 1831668 ~ 1831971 (+) True G284851
TU322770 lncRNA downstream 1150 1920983 ~ 1922486 (+) True G284796
TU322850 lncRNA downstream 3420 1923253 ~ 1923565 (+) True G284872
TU322851 lncRNA downstream 4279 1924112 ~ 1925189 (+) True G284873
TU322719 lncRNA downstream 17654 1937487 ~ 1939318 (+) True G284745
TU322858 lncRNA downstream 47214 1967047 ~ 1967313 (+) True G284876
CI01000072_01864149_01879788.mRNA mRNA upstream 36691 1863911 ~ 1880204 (+) True CI01000072_01864149_01879788
CI01000072_01762899_01783522.mRNA mRNA upstream 132935 1762567 ~ 1783960 (+) True CI01000072_01762899_01783522
CI01000072_01724644_01730223.mRNA mRNA upstream 185735 1724452 ~ 1731160 (+) True CI01000072_01724644_01730223
CI01000072_01413987_01424254.mRNA mRNA upstream 492641 1413987 ~ 1424254 (+) True CI01000072_01413987_01424254
CI01000072_01406735_01412673.mRNA mRNA upstream 503775 1406735 ~ 1413120 (+) True CI01000072_01406735_01412673
CI01000072_02000581_02009243.mRNA mRNA downstream 79807 1999640 ~ 2009426 (+) True CI01000072_02000581_02009243
CI01000072_02016536_02023336.mRNA mRNA downstream 96589 2016422 ~ 2023361 (+) True CI01000072_02016536_02023336
CI01000072_02028275_02032319.mRNA mRNA downstream 108043 2027876 ~ 2032703 (+) True CI01000072_02028275_02032319
CI01000072_02033013_02040077.mRNA mRNA downstream 113144 2032977 ~ 2040725 (+) True CI01000072_02033013_02040077
CI01000072_02058184_02067046.mRNA mRNA downstream 138054 2057887 ~ 2067049 (+) True CI01000072_02058184_02067046
TU321805 other upstream 1565607 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 61697 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 2050424 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 2249271 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 2249271 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 2305005 4232318 ~ 4232421 (+) False G286474

Expression Profile