RNA id: TU324705



Basic Information


Item Value
RNA id TU324705
length 104
RNA type TUCP
GC content 0.48
exon number 1
gene id G286474
representative False

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4232318 ~ 4238685 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATGATGCCTCCTGCAAGTCAACTCGTGTACTCTCGCAAACACAGCTGAAATATTAGAGCTCTATTGTATTGGAGGAGGTGGCGTGACACTTCGCCGCGCTCCTAAACACTCTGCTCGTTCTGGTAAGACGAGCGGACCGTCAGCGAGCACCGTGGCCGGCACGCTGGCATTTCTACACGTTTTAGCCTCTGCCGACCTCGTTATCTTGAGGCTCAAGTGGCAGGTCTCTATCTTCTCACCCCAAACCCTAGTGTTTCACTAACAGCATGGTCATGGCTGACTGTCACCAAAAGCCAGTGCTCAGGGGTCCTGTCCGAGTGGGCTTCTACGATATCGAACGGACTCTTGGAAAGGGGAATTTCGCTGTTGTAAAACTGGCAAGACATCGTATAACCAAGACAGAGGTGGCTATAAAGATCATTGACAAGACCCAGCTAGATGCTGTAAACCTGGAGAAGATCTATCGTGAAGTACAGATCATGAAAATGCTGGACCATCCACACATCATTAAACTGTACCAGGTCATGGAGACCAAGAATATGCTGTACCTTGTGACAGAATACGCCAAGAATGGGGAAATCTTTGGTAAGTGTTTTTTAGTATTAATGACACACCAGCCATCACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU324718 lncRNA upstream 34468 4173619 ~ 4190370 (+) True G286480
TU324693 lncRNA upstream 44996 4177979 ~ 4179842 (+) True G286471
TU324690 lncRNA upstream 56955 4167506 ~ 4167883 (+) True G286469
TU324680 lncRNA upstream 75003 4149569 ~ 4149835 (+) True G286459
TU324679 lncRNA upstream 75606 4149028 ~ 4149232 (+) True G286458
TU324714 lncRNA downstream 36593 4269014 ~ 4270012 (+) False G286477
TU324715 lncRNA downstream 36593 4269014 ~ 4275631 (+) True G286477
TU324750 lncRNA downstream 48177 4280598 ~ 4280835 (+) True G286505
TU324758 lncRNA downstream 90802 4323223 ~ 4323835 (+) True G286513
TU324759 lncRNA downstream 93107 4325528 ~ 4325764 (+) True G286514
CI01000072_04218108_04222857.mRNA mRNA upstream 1560 4218108 ~ 4223278 (+) True CI01000072_04218108_04222857
CI01000072_04203719_04206013.mRNA mRNA upstream 18571 4203719 ~ 4206267 (+) True CI01000072_04203719_04206013
CI01000072_04095246_04107965.mRNA mRNA upstream 116168 4095246 ~ 4108670 (+) True CI01000072_04095246_04107965
CI01000072_04057264_04059507.mRNA mRNA upstream 163487 4057264 ~ 4061351 (+) True CI01000072_04057264_04059507
CI01000072_03987009_04043360.mRNA mRNA upstream 180583 3986806 ~ 4044255 (+) True CI01000072_03987009_04043360
CI01000072_04329947_04337502.mRNA mRNA downstream 97086 4329507 ~ 4338038 (+) True CI01000072_04329947_04337502
CI01000072_04338747_04342064.mRNA mRNA downstream 106326 4338747 ~ 4342371 (+) False CI01000072_04338747_04342064
CI01000072_04346264_04350998.mRNA mRNA downstream 113743 4346164 ~ 4351370 (+) True CI01000072_04346264_04350998
CI01000072_04353484_04415940.mRNA mRNA downstream 120443 4352864 ~ 4415940 (+) True CI01000072_04353484_04415940
CI01000072_04471801_04478691.mRNA mRNA downstream 239081 4471502 ~ 4479311 (+) False CI01000072_04471801_04478691
TU324692 other upstream 49187 4169104 ~ 4175651 (+) True G286470
TU324691 other upstream 52745 4169104 ~ 4172093 (+) False G286470
TU323494 other upstream 248624 3970257 ~ 3976214 (+) True G285428
TU322715 other upstream 2239698 1981530 ~ 1985140 (+) True G284742
TU321805 other upstream 3873550 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU324694 other downstream 106298 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064
TU324695 other downstream 106298 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324804 other downstream 527890 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324852 other downstream 570032 4802453 ~ 4802948 (+) True G286564
TU324877 other downstream 596977 4829398 ~ 4830997 (+) True G286589

Expression Profile