RNA id: CI01000072_04338747_04342064.mRNA



Basic Information


Item Value
RNA id CI01000072_04338747_04342064.mRNA
length 745
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000072_04338747_04342064
representative False

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4338719 ~ 4343266 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCGGCTCTTGTCAGGTTGAGTTCTGTTTGCCACAGAGGTGTCAGCCCTCTGTTATTTCGTACGTCCTCCCTCATCAGACCTTTGGCCATACAGAAGAAGGATCATGATTGTCCATACTTGATATCAGCAAAGATACATGCTACTCCTTCCAACTACGGGGAGCGGATCCTGAGCGTAGTTCTTCTGGGCATGGCACCCATGGCGTATTATTTCCCCGGCCCTGCTGTTGACTACTCTTTAGCAGCTGCACTTACTCTACATGGTCACTGGGGACTTGGCCAGGTTTTGACAGACTACGTTCATGGAGACTTTAAAGTCAAGATGGCTAACGCCGGCCTCTTCATTCTCTCGACCGTCACCTTCGCCGGCCTGTGCTACTTCAACTACCATGATGTGGGGATTTGTAAAGCTGTGGCCCTCTTGTGGAGTAAATGATTGGACTGAGATGAGAGATATGGCTTTTGCCATCAGAGTTCCAGTTTATTGTATACAGTTGTGACATATGTAAATTCTATGAATATAAAATTTTTGACAACATAGTGTCGATTTGCAGGTGTTTTAATTTTGAATGCTGTCAGTTTGATCAGAACTTGCTCAGCTTTTGCTTAAGATGGAAATCTCTGCATGTCTTCCACTCTTTTGTTTGTCAAATCAGTGTTTCTGATGCAGCAAAATCACCTAATTGTTGTGGCTATAAAATGTTGGTCGCTGAATTTGAACTTGAAAAATCCCTACGGTAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU324759 lncRNA upstream 12983 4325528 ~ 4325764 (+) True G286514
TU324758 lncRNA upstream 14912 4323223 ~ 4323835 (+) True G286513
TU324750 lncRNA upstream 57912 4280598 ~ 4280835 (+) True G286505
TU324715 lncRNA upstream 63116 4269014 ~ 4275631 (+) True G286477
TU324714 lncRNA upstream 68735 4269014 ~ 4270012 (+) False G286477
TU324771 lncRNA downstream 84841 4427212 ~ 4427529 (+) True G286525
TU324775 lncRNA downstream 95559 4437930 ~ 4438145 (+) True G286529
TU324888 lncRNA downstream 119131 4461502 ~ 4461789 (+) True G286600
TU324889 lncRNA downstream 119503 4461874 ~ 4462434 (+) True G286601
TU324890 lncRNA downstream 120312 4462683 ~ 4463695 (+) True G286602
CI01000072_04329947_04337502.mRNA mRNA upstream 709 4329507 ~ 4338038 (+) True CI01000072_04329947_04337502
CI01000072_04225105_04268007.mRNA mRNA upstream 70599 4224789 ~ 4268148 (+) False CI01000072_04225105_04268007
CI01000072_04218108_04222857.mRNA mRNA upstream 115469 4218108 ~ 4223278 (+) True CI01000072_04218108_04222857
CI01000072_04203719_04206013.mRNA mRNA upstream 132480 4203719 ~ 4206267 (+) True CI01000072_04203719_04206013
CI01000072_04095246_04107965.mRNA mRNA upstream 230077 4095246 ~ 4108670 (+) True CI01000072_04095246_04107965
CI01000072_04346264_04350998.mRNA mRNA downstream 3793 4346164 ~ 4351370 (+) True CI01000072_04346264_04350998
CI01000072_04353484_04415940.mRNA mRNA downstream 10493 4352864 ~ 4415940 (+) True CI01000072_04353484_04415940
CI01000072_04471801_04478691.mRNA mRNA downstream 129131 4471502 ~ 4479311 (+) False CI01000072_04471801_04478691
CI01000072_04480997_04481407.mRNA mRNA downstream 137866 4480237 ~ 4482756 (+) False CI01000072_04480997_04481407
CI01000072_04635652_04646429.mRNA mRNA downstream 293221 4635592 ~ 4646465 (+) True CI01000072_04635652_04646429
TU324705 other upstream 106326 4232318 ~ 4232421 (+) False G286474
TU324692 other upstream 163096 4169104 ~ 4175651 (+) True G286470
TU324691 other upstream 166654 4169104 ~ 4172093 (+) False G286470
TU323494 other upstream 362533 3970257 ~ 3976214 (+) True G285428
TU322715 other upstream 2353607 1981530 ~ 1985140 (+) True G284742
TU324804 other downstream 417940 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324852 other downstream 460082 4802453 ~ 4802948 (+) True G286564
TU324877 other downstream 487027 4829398 ~ 4830997 (+) True G286589

Expression Profile