Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU324877 |
| length | 676 |
| RNA type | TUCP |
| GC content | 0.48 |
| exon number | 4 |
| gene id | G286589 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000072 |
| NCBI id | null |
| chromosome length | 5473029 |
| location | 4829398 ~ 4830997 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU324883 | lncRNA | upstream | 23516 | 4805678 ~ 4805882 (+) | True | G286595 |
| TU324973 | lncRNA | upstream | 59005 | 4770107 ~ 4770393 (+) | True | G286676 |
| TU324972 | lncRNA | upstream | 60096 | 4769047 ~ 4769302 (+) | True | G286675 |
| TU324847 | lncRNA | upstream | 80611 | 4748406 ~ 4748787 (+) | True | CI01000072_04738344_04748841 |
| TU324946 | lncRNA | upstream | 203047 | 4623612 ~ 4626351 (+) | False | G286651 |
| TU324853 | lncRNA | downstream | 1857 | 4833645 ~ 4895601 (+) | True | G286565 |
| TU324861 | lncRNA | downstream | 71192 | 4902980 ~ 4906118 (+) | True | G286573 |
| TU324993 | lncRNA | downstream | 156585 | 4988373 ~ 4990194 (+) | True | CI01000072_04974135_04987086 |
| TU324995 | lncRNA | downstream | 159573 | 4991361 ~ 4991885 (+) | True | G286695 |
| TU325032 | lncRNA | downstream | 201752 | 5033540 ~ 5033825 (+) | True | G286722 |
| CI01000072_04790857_04794136.mRNA | mRNA | upstream | 35004 | 4789971 ~ 4794394 (+) | True | CI01000072_04790857_04794136 |
| CI01000072_04778819_04782897.mRNA | mRNA | upstream | 45951 | 4778819 ~ 4783447 (+) | True | CI01000072_04778819_04782897 |
| CI01000072_04757636_04762507.mRNA | mRNA | upstream | 66891 | 4757583 ~ 4762507 (+) | False | CI01000072_04757636_04762507 |
| CI01000072_04738344_04748841.mRNA | mRNA | upstream | 80497 | 4738291 ~ 4748901 (+) | False | CI01000072_04738344_04748841 |
| CI01000072_04721539_04727645.mRNA | mRNA | upstream | 101660 | 4721114 ~ 4727738 (+) | True | CI01000072_04721539_04727645 |
| CI01000072_04852708_04855831.mRNA | mRNA | downstream | 20646 | 4852434 ~ 4855921 (+) | True | CI01000072_04852708_04855831 |
| CI01000072_04861662_04880150.mRNA | mRNA | downstream | 29874 | 4861662 ~ 4880460 (+) | True | CI01000072_04861662_04880150 |
| CI01000072_04883669_04888061.mRNA | mRNA | downstream | 51881 | 4883669 ~ 4889286 (+) | True | CI01000072_04883669_04888061 |
| CI01000072_04891865_04915635.mRNA | mRNA | downstream | 60077 | 4891865 ~ 4915686 (+) | True | CI01000072_04891865_04915635 |
| CI01000072_04924865_04927684.mRNA | mRNA | downstream | 93077 | 4924865 ~ 4928530 (+) | True | CI01000072_04924865_04927684 |
| TU324852 | other | upstream | 26450 | 4802453 ~ 4802948 (+) | True | G286564 |
| TU324804 | other | upstream | 66888 | 4760311 ~ 4762510 (+) | True | CI01000072_04757636_04762507 |
| TU324695 | other | upstream | 486132 | 4338719 ~ 4343266 (+) | True | CI01000072_04338747_04342064 |
| TU324694 | other | upstream | 486215 | 4338719 ~ 4343183 (+) | False | CI01000072_04338747_04342064 |
| TU324705 | other | upstream | 596977 | 4232318 ~ 4232421 (+) | False | G286474 |
