RNA id: CI01000072_04790857_04794136.mRNA


Basic Information

Item Value
RNA id CI01000072_04790857_04794136.mRNA
length 2857
RNA type mRNA
GC content 0.42
exon number 9
gene id CI01000072_04790857_04794136
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4789971 ~ 4794394 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATATGATCTGGCCAGGCCTTACAGGGCAGAATAATATTTTTTTCAAGTCTGTCTTAAAGTACTCACATTGCATTGGCAAAACTCTTATTATGAATCACCATGATGATTCTTCTCCATGATGGCTGAGATACTCTCTCAAAAAGAGTTTAAATAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATATCCACTTGACTGGCGAGATACTTAGCTGACGCCTCATATTTGCTTCAGCTGAACATTTGAATTAATCTATACAAAAAAATGACAACTGCAGGGCAACAGGTTAAAACCCCTCAAAACAAATTATCAACCTCATATAGCATGCTAAACAGTCGGAACACACCAGAAACCACATAAAACACCTTAGAAACTGCACAACACCACATCAGAACACATTAGCAACAACATAAAGACAAAATAGAAAATGTAAATATCTAGTTTTAGATTAATTTATGCATACTTAAATACTAGAATTACATTCAATAAAAATGGTCACCCTGTCACAGTCTCGTCCTCTTACATGCTAGCTAAGAACATTTTAGGTGACAAACTAATTTACATGGCTACAGAGGAAGTTAAGGAGACGTGCCAATCAGTATTATTTTTCCTGTTCAGAAGGAACAAATAAGCAAGAAATATGCAAATATGAATGCTAAACTAGTGTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTACAAATCTAGTGTAAAATTCCCAGAATTGACTTGTTAGGACAGCGAATGTTTGTAAGCAGTTGTGCAAGGTGAAGTCCGTGTAGACGCTGACAAGTTACAGAATGGTATCCTGCGTCCAATGGATCTATTAATCATTCACTTTTCACAGAGGTCAACAGGATTATTTGTCCCTAGTAATGCATTCCCACATTAGTCTAGTAAAGTACGTCATGGTGGACTCTGTTAAACAGACTACATTTTTTCTTCATTCACTAGATACCAGAATGAGGCTTTTTCTGCTGCTAGGACTGATTTTCTTAACATATGCGGCTGAACAAGAGTCGTGTATTGAGCGCTGTGAAAATGGGTTTGACGCCACCAAGAACTGCCAGTGTGACTCTATGTGCACATACTACAAGAGCTGTTGCAAAGACTATGAGTCCTTATGTCGTATTAGGACCCGTGGTGACACCTTTCCTTCTTACCCTGAGGATGATTATGAGGAGGAAACAAATAGCACAGAGGTGCCAATCAGATCCAGATCACAGCAAAAAATGTTGACCCGTTCTCCAGCAACCTTTACTGAAATATTCAGCCTATTAACACCAGCTTCTCAAGTCTTGGATTCAACATTAAATGATGACCCAACACCAGTGATTGCCACTGCTGCCACTCCAACTACATATTACTCTCTATTACCCTCCACCATCAAGAACCCAACCACAACTGCACGCACAACCTCAGCTGCTGATCCCACACCAACAAAAGCCAAAGACCCTGATGCTGATGTCTGCAGTGGCAGACCCTTTGACTCCTTCATGCAGCTCAAAAATGGCTCTTTATATGCATTCAGAGGAGAATATTTTTTTGAGCTTGATGAGAAATCAGTATTACCGGGTTACCCAAAGCTCATCGAAGACATCTGGGGAATAAAAGGTCCGATAGATGCTGCCTTCACTCGCATAAACTGCCAAGGAAAGACGTACATTTTCAAAGGTAAAAAATACTGGAGGTTTGATGATGGAGTACTAGATGAAGACTTCCCACGGGACATATCTGTGGGATTTGAGAGGATACCAGACCATCTTGATGCTGCCTTTGCCATTCCTGCTCACAGCCATCATGGCAAAGAAAAAGTTTATTTTTTTAAAGGAGACCAGTATTACCATTATGAGTTCAAGCACCAGCCATCCCATGAGGAGTGCATTCAGATGTCATTGAGATCTCCCTCAGCACTCTTCAGCAGATACACTAATATTTACTATGACCGATGGGTTGAGTACTTCAACCAGCTCTTTGGTGGAGCCCAAAGTCATCACGGTGGCCATCACTTCATTAACAGAGACTGGATTGGCATCAAATCTCCTGTGGATGCTGTGCTAGCCGGCAGACTCTACATCACTCAGAGATGGCCCAACAGAAGGCGTCAGGACAGAAATCGGCAGGATTGGGACCAGCAGTGGGGCCAGCGGTATGGGCAGCATTGGGGGCAGCGGTATGGGCAGCAGTGGGATCAGCAGTGGGGCTCCAGGCGCAGGCAGAATAGGTCCCCGTACTGGGAGACTATGGCTGAGAGGGGCATCAGCATTGGACAGGAGTTTGCTCAGAGGTTTGGACAGGACAGGTGGCAAGATCAGGACAGACGCCGAGATCAGGACAGACGCAGAGACTATTATCATAGACAAAATGACTACGATTACGACTACAGATACAAACCTTCGGAAGATGTTGTCTATGACGAACTGAGCAGGAGTCAGCCCTTACAGAGTGTCTACTTCTTCAAAGGAGATATGTACTACCGAGTGAATCTCCGAACCAAGCGGGTTGACTATGCAAACCCTCCATATCCAAGACCTATTGGAAAATACTGGCTTGGCTGCAAAGACATGCCAGGAGCAGAAAAGAGATGAGTCCAACAGTAAACGACTGCCATTTAATAGCATTTATCATACAAAAATAAGCTGCATTTGTACGATCAAAAATAAGGGTGATCAGTAGGGCCTTAGAATCTCTCCACAGATTTCCACACAACTGGAATGATATCATTCATAATGTTCTACAAGTCGCCATCCTTAATGTCTAATCTGATCTGTATTCCTGATTGTTGTGGTGATTGATTAAGCTCAGTGGACATCATGCAGTTTTTAGTCTAAAACATTACATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324973 lncRNA upstream 19578 4770107 ~ 4770393 (+) True G286676
TU324972 lncRNA upstream 20669 4769047 ~ 4769302 (+) True G286675
TU324847 lncRNA upstream 41184 4748406 ~ 4748787 (+) True CI01000072_04738344_04748841
TU324946 lncRNA upstream 163620 4623612 ~ 4626351 (+) False G286651
TU324883 lncRNA downstream 11284 4805678 ~ 4805882 (+) True G286595
TU324853 lncRNA downstream 39251 4833645 ~ 4895601 (+) True G286565
TU324861 lncRNA downstream 108586 4902980 ~ 4906118 (+) True G286573
TU324993 lncRNA downstream 193979 4988373 ~ 4990194 (+) True CI01000072_04974135_04987086
TU324995 lncRNA downstream 196967 4991361 ~ 4991885 (+) True G286695
CI01000072_04778819_04782897.mRNA mRNA upstream 6524 4778819 ~ 4783447 (+) True CI01000072_04778819_04782897
CI01000072_04757636_04762507.mRNA mRNA upstream 27464 4757583 ~ 4762507 (+) False CI01000072_04757636_04762507
CI01000072_04738344_04748841.mRNA mRNA upstream 41070 4738291 ~ 4748901 (+) False CI01000072_04738344_04748841
CI01000072_04721539_04727645.mRNA mRNA upstream 62233 4721114 ~ 4727738 (+) True CI01000072_04721539_04727645
CI01000072_04683704_04714952.mRNA mRNA upstream 74844 4682826 ~ 4715127 (+) True CI01000072_04683704_04714952
CI01000072_04831647_04834194.mRNA mRNA downstream 37163 4831557 ~ 4834707 (+) False CI01000072_04831647_04834194
CI01000072_04852708_04855831.mRNA mRNA downstream 58040 4852434 ~ 4855921 (+) True CI01000072_04852708_04855831
CI01000072_04861662_04880150.mRNA mRNA downstream 67268 4861662 ~ 4880460 (+) True CI01000072_04861662_04880150
CI01000072_04883669_04888061.mRNA mRNA downstream 89275 4883669 ~ 4889286 (+) True CI01000072_04883669_04888061
CI01000072_04891865_04915635.mRNA mRNA downstream 97471 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
TU324804 other upstream 27461 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 446705 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 446788 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064
TU324705 other upstream 557550 4232318 ~ 4232421 (+) False G286474
TU324692 other upstream 614320 4169104 ~ 4175651 (+) True G286470
TU324852 other downstream 8059 4802453 ~ 4802948 (+) True G286564
TU324877 other downstream 35004 4829398 ~ 4830997 (+) True G286589

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017103 True 1855 mRNA 0.45 8 NC_007126.7 28202170 ~ 28208926 (+)