RNA id: CI01000072_04778819_04782897.mRNA



Basic Information


Item Value
RNA id CI01000072_04778819_04782897.mRNA
length 2323
RNA type mRNA
GC content 0.44
exon number 8
gene id CI01000072_04778819_04782897
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4778819 ~ 4783447 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCAGAAGCCACGCCCACAGAGCAAAACGGACCAATCACCGGTAGTGTACAGCGGTACGGTAGTTAATCCATTCAAGATGGTACTACTTACTTTACTGGGACTAACTGCTTTATTTCTAAAAGAAAAGAAAGAAGTAAAGAACACCCACTCAGGTCAAGATGAAAAAGAGGACCAGAGTGATGCAGTACCCGCGAGCAGTACTGATGGTCAGACTTCTCAGCAGATCACCAGTGACCCTGAAGTCCTCACTACTGAAGAGGAACTTACTGGTCACCCTGAAATCGATGGGGATGGCATCTTCCAAGATTTCGTTGGTGATTCATCTGAACGGAGCGCTGAGACCCTCCATCCAAGTGATGATGGCCTTGAGGAGGATTATTCTGAACCCCTTCCATTGGTGCTGCAACATCAGCTGTCAGAGGATCAGCAGAGAGATGGAGCCTCGGACAATGAGACTGAATCAGACTCTGAGGTTCCTGAAGTTCCTGTTTCTGCCGATGACACACCAGGGGTTCTTAACAAAGTCCTCTCAGGCTTTTCCTCACAATGGACGAACTGGTGGGAGAGAGAATCATATGAGATCCTCACTCTAATACCAGAACTTCATTTCCTTCGCCCTATATTTAGTAGGGCTCTGCATGTTTCTTCTGAGCCTGGTCAGCCTTCTCAGCAGATCACCAGTGACCCTGAAGTCCTCACTACCGAAGAGGAACTTACTGGTCACCCTGAAATCGCTGGTGATTCATCTGAACGGAGTGGCGAGGCCCTCCATGCTCTCAACAGTGTCATGTGTGGCTTTAATGTCAGCTCACTCGACATTCCCCAAGTTCCAGTCCCTGCCTTGTCCGACTGTACAGTCGACATCCCAAAAGCTTCAGAAAGTCCAACAGAGGACACTCTGGCACCTCAGTCAAGCCAGCTGAAGGATAATGAGACAACAATAATGGACATCAATGCCTGCTGCGATGAAATCGGCATTCAGCAAAGTGATGATGGCCTTGAGGAGGATTATTCTGAACCCCTTCCATTGGTGCTGCAACATCAGCTGTCAGAGGATCAGCAGAGAGATGGAGCCTCGGACGATGAGACTGAATCAGACTCTGAGGTTCCTGAAGTTCCTGTTCTTGTCGATGACACACCAGGGGTTCTCTCAGGCCTTTCCTCACAATGGAAGAACTGGTGGGAGAGATCCTCATGGAAGATCCTCACTCTGACTGTGATCTCCCTCCTCTTCGTCACTATTTATCTGAGTCCGATGACGCTGATGATGAGTGGGCTGTGCGTTCAGATCAAGTTCTTCGAACAGATCATCACAACTGGTTCCAGAGTGTATCACTCTTACCACATGCCGTGGTTCAGAACCCTAAGTTTGTACTTCCTGCTGTGCGTGAACTACTACTTCTATGGTGAAACGATCGCAGATTATTTCTTCACTCTGGTCCAGATGGAGGAGTATATACACATGTTCAGCAAATACCAGCACTTCATTTCCTACGCCTTGTACCTAGTAGGGTTCTGCATGGTTGTTTTGAGCCTGGAGGATTATTCTGAACCCCTTCCATTGGTGCTGCAACATCAGCTGTCAGAGGATCAGCAGAGAGATGGAGCCTCGGACAATGAGACTGAATCAGACTCTGAGGTTCCTGAAGTTCCTGTTCCTGCCGATGACACACCAGGGGTTCTTAACAAAGTCCTCTCAGGCCTTTCCTCACAATGGACAAACTGGTGGGAGAGAGAATCATGGGAGATCCTCACTCTAGTTTACCGATAAACAAGATGACAATGCAATGCAATTATGCAAGAGAACAGCAAGGCAGGCAGCAGAGAAAGTGGACCCCCCAGGGGAAAGAGAAGAGGCGGAGCATAAGTGGGCCCCGCCTGCTGGAATGAGGAGGGGCACTTGCTGGAAGAAGACAATATTTTTTAATAAAAATTTTATAAAAATGAAAGCACTTCAACTACCTTTAGTGTAATTTAATCGTAATTTAAAATACATGTTTATTGTTATAATTTAAGTACAGTTGGAATATATTTTAAGATTTATTTCATTTATTTTAAAAATATTTTTATATTTTCATTTTAACAGGTTTCCAGAACATTTCCAATATCAGCTCATTAGTAATTTATTACCAGTACACTACAAGAGCCACTATTAGTATATTAAAAAGTTGTTCATTAAAAACATTCAGAATGACAATAATGTCTTGTTACTGTTGTAAGTAAACAGTGGAAATGCTCTTTTATTACAATATAGATCATTAAAAATGTTTTAAAACACACACACACTTGAGTTCATTACAAATATAAATTCTTTGTTTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU324973 lncRNA upstream 8426 4770107 ~ 4770393 (+) True G286676
TU324972 lncRNA upstream 9517 4769047 ~ 4769302 (+) True G286675
TU324847 lncRNA upstream 30032 4748406 ~ 4748787 (+) True CI01000072_04738344_04748841
TU324946 lncRNA upstream 152468 4623612 ~ 4626351 (+) False G286651
TU324947 lncRNA upstream 152468 4623612 ~ 4626351 (+) True G286651
TU324883 lncRNA downstream 22231 4805678 ~ 4805882 (+) True G286595
TU324853 lncRNA downstream 50198 4833645 ~ 4895601 (+) True G286565
TU324861 lncRNA downstream 119533 4902980 ~ 4906118 (+) True G286573
TU324993 lncRNA downstream 204926 4988373 ~ 4990194 (+) True CI01000072_04974135_04987086
TU324995 lncRNA downstream 207914 4991361 ~ 4991885 (+) True G286695
CI01000072_04757636_04762507.mRNA mRNA upstream 16312 4757583 ~ 4762507 (+) False CI01000072_04757636_04762507
CI01000072_04738344_04748841.mRNA mRNA upstream 29918 4738291 ~ 4748901 (+) False CI01000072_04738344_04748841
CI01000072_04721539_04727645.mRNA mRNA upstream 51081 4721114 ~ 4727738 (+) True CI01000072_04721539_04727645
CI01000072_04683704_04714952.mRNA mRNA upstream 63692 4682826 ~ 4715127 (+) True CI01000072_04683704_04714952
CI01000072_04665875_04678048.mRNA mRNA upstream 100743 4665822 ~ 4678076 (+) True CI01000072_04665875_04678048
CI01000072_04790857_04794136.mRNA mRNA downstream 6524 4789971 ~ 4794394 (+) True CI01000072_04790857_04794136
CI01000072_04831647_04834194.mRNA mRNA downstream 48110 4831557 ~ 4834707 (+) False CI01000072_04831647_04834194
CI01000072_04852708_04855831.mRNA mRNA downstream 68987 4852434 ~ 4855921 (+) True CI01000072_04852708_04855831
CI01000072_04861662_04880150.mRNA mRNA downstream 78215 4861662 ~ 4880460 (+) True CI01000072_04861662_04880150
CI01000072_04883669_04888061.mRNA mRNA downstream 100222 4883669 ~ 4889286 (+) True CI01000072_04883669_04888061
TU324804 other upstream 16309 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 435553 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 435636 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064
TU324705 other upstream 546398 4232318 ~ 4232421 (+) False G286474
TU324692 other upstream 603168 4169104 ~ 4175651 (+) True G286470
TU324852 other downstream 19006 4802453 ~ 4802948 (+) True G286564
TU324877 other downstream 45951 4829398 ~ 4830997 (+) True G286589

Expression Profile