RNA id: TU324972


Basic Information

Item Value
RNA id TU324972
length 256
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G286675
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4769047 ~ 4769302 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAAAAACACAACAGGTTCACACCATCGGTTAAGTGTAAAGTGAAAGTAAGCAGTTGAAAGAAAATCGAATGCGTGTCAATAAATTAGATGCGCGCATGAGCCTTAAAGTGACAGACAACACATGCTGCGACTTGTCCTTAAAGGGGTAGTTCAACCAAAAATGAAAATTCTGTCTTTATTTACTCACTCTAAAGTTGATCCAGACCTGTATTAATTTCTGTCTTGTGCTGAACACAGAAGAACATATTTTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324847 lncRNA upstream 20260 4748406 ~ 4748787 (+) True CI01000072_04738344_04748841
TU324946 lncRNA upstream 142696 4623612 ~ 4626351 (+) False G286651
TU324947 lncRNA upstream 142696 4623612 ~ 4626351 (+) True G286651
TU324950 lncRNA upstream 148091 4618397 ~ 4620956 (+) True G286653
TU324961 lncRNA upstream 150769 4617849 ~ 4618278 (+) True G286664
TU324973 lncRNA downstream 805 4770107 ~ 4770393 (+) True G286676
TU324883 lncRNA downstream 36376 4805678 ~ 4805882 (+) True G286595
TU324853 lncRNA downstream 64343 4833645 ~ 4895601 (+) True G286565
TU324861 lncRNA downstream 133678 4902980 ~ 4906118 (+) True G286573
TU324993 lncRNA downstream 219071 4988373 ~ 4990194 (+) True CI01000072_04974135_04987086
CI01000072_04757636_04762507.mRNA mRNA upstream 6540 4757583 ~ 4762507 (+) False CI01000072_04757636_04762507
CI01000072_04738344_04748841.mRNA mRNA upstream 20146 4738291 ~ 4748901 (+) False CI01000072_04738344_04748841
CI01000072_04721539_04727645.mRNA mRNA upstream 41309 4721114 ~ 4727738 (+) True CI01000072_04721539_04727645
CI01000072_04683704_04714952.mRNA mRNA upstream 53920 4682826 ~ 4715127 (+) True CI01000072_04683704_04714952
CI01000072_04665875_04678048.mRNA mRNA upstream 90971 4665822 ~ 4678076 (+) True CI01000072_04665875_04678048
CI01000072_04778819_04782897.mRNA mRNA downstream 9517 4778819 ~ 4783447 (+) True CI01000072_04778819_04782897
CI01000072_04790857_04794136.mRNA mRNA downstream 20669 4789971 ~ 4794394 (+) True CI01000072_04790857_04794136
CI01000072_04831647_04834194.mRNA mRNA downstream 62255 4831557 ~ 4834707 (+) False CI01000072_04831647_04834194
CI01000072_04852708_04855831.mRNA mRNA downstream 83132 4852434 ~ 4855921 (+) True CI01000072_04852708_04855831
CI01000072_04861662_04880150.mRNA mRNA downstream 92360 4861662 ~ 4880460 (+) True CI01000072_04861662_04880150
TU324804 other upstream 6537 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 425781 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 425864 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064
TU324705 other upstream 536626 4232318 ~ 4232421 (+) False G286474
TU324692 other upstream 593396 4169104 ~ 4175651 (+) True G286470
TU324852 other downstream 33151 4802453 ~ 4802948 (+) True G286564
TU324877 other downstream 60096 4829398 ~ 4830997 (+) True G286589

Expression Profile