CI01000072_04790857_04794136


Basic Information

Item Value
gene id CI01000072_04790857_04794136
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4789971 ~ 4794394 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_04790857_04794136.mRNA
GTATATATGATCTGGCCAGGCCTTACAGGGCAGAATAATATTTTTTTCAAGTCTGTCTTAAAGTACTCACATTGCATTGGCAAAACTCTTATTATGAATCACCATGATGATTCTTCTCCATGATGGCTGAGATACTCTCTCAAAAAGAGTTTAAATAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATATCCACTTGACTGGCGAGATACTTAGCTGACGCCTCATATTTGCTTCAGCTGAACATTTGAATTAATCTATACAAAAAAATGACAACTGCAGGGCAACAGGTTAAAACCCCTCAAAACAAATTATCAACCTCATATAGCATGCTAAACAGTCGGAACACACCAGAAACCACATAAAACACCTTAGAAACTGCACAACACCACATCAGAACACATTAGCAACAACATAAAGACAAAATAGAAAATGTAAATATCTAGTTTTAGATTAATTTATGCATACTTAAATACTAGAATTACATTCAATAAAAATGGTCACCCTGTCACAGTCTCGTCCTCTTACATGCTAGCTAAGAACATTTTAGGTGACAAACTAATTTACATGGCTACAGAGGAAGTTAAGGAGACGTGCCAATCAGTATTATTTTTCCTGTTCAGAAGGAACAAATAAGCAAGAAATATGCAAATATGAATGCTAAACTAGTGTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTACAAATCTAGTGTAAAATTCCCAGAATTGACTTGTTAGGACAGCGAATGTTTGTAAGCAGTTGTGCAAGGTGAAGTCCGTGTAGACGCTGACAAGTTACAGAATGGTATCCTGCGTCCAATGGATCTATTAATCATTCACTTTTCACAGAGGTCAACAGGATTATTTGTCCCTAGTAATGCATTCCCACATTAGTCTAGTAAAGTACGTCATGGTGGACTCTGTTAAACAGACTACATTTTTTCTTCATTCACTAGATACCAGAATGAGGCTTTTTCTGCTGCTAGGACTGATTTTCTTAACATATGCGGCTGAACAAGAGTCGTGTATTGAGCGCTGTGAAAATGGGTTTGACGCCACCAAGAACTGCCAGTGTGACTCTATGTGCACATACTACAAGAGCTGTTGCAAAGACTATGAGTCCTTATGTCGTATTAGGACCCGTGGTGACACCTTTCCTTCTTACCCTGAGGATGATTATGAGGAGGAAACAAATAGCACAGAGGTGCCAATCAGATCCAGATCACAGCAAAAAATGTTGACCCGTTCTCCAGCAACCTTTACTGAAATATTCAGCCTATTAACACCAGCTTCTCAAGTCTTGGATTCAACATTAAATGATGACCCAACACCAGTGATTGCCACTGCTGCCACTCCAACTACATATTACTCTCTATTACCCTCCACCATCAAGAACCCAACCACAACTGCACGCACAACCTCAGCTGCTGATCCCACACCAACAAAAGCCAAAGACCCTGATGCTGATGTCTGCAGTGGCAGACCCTTTGACTCCTTCATGCAGCTCAAAAATGGCTCTTTATATGCATTCAGAGGAGAATATTTTTTTGAGCTTGATGAGAAATCAGTATTACCGGGTTACCCAAAGCTCATCGAAGACATCTGGGGAATAAAAGGTCCGATAGATGCTGCCTTCACTCGCATAAACTGCCAAGGAAAGACGTACATTTTCAAAGGTAAAAAATACTGGAGGTTTGATGATGGAGTACTAGATGAAGACTTCCCACGGGACATATCTGTGGGATTTGAGAGGATACCAGACCATCTTGATGCTGCCTTTGCCATTCCTGCTCACAGCCATCATGGCAAAGAAAAAGTTTATTTTTTTAAAGGAGACCAGTATTACCATTATGAGTTCAAGCACCAGCCATCCCATGAGGAGTGCATTCAGATGTCATTGAGATCTCCCTCAGCACTCTTCAGCAGATACACTAATATTTACTATGACCGATGGGTTGAGTACTTCAACCAGCTCTTTGGTGGAGCCCAAAGTCATCACGGTGGCCATCACTTCATTAACAGAGACTGGATTGGCATCAAATCTCCTGTGGATGCTGTGCTAGCCGGCAGACTCTACATCACTCAGAGATGGCCCAACAGAAGGCGTCAGGACAGAAATCGGCAGGATTGGGACCAGCAGTGGGGCCAGCGGTATGGGCAGCATTGGGGGCAGCGGTATGGGCAGCAGTGGGATCAGCAGTGGGGCTCCAGGCGCAGGCAGAATAGGTCCCCGTACTGGGAGACTATGGCTGAGAGGGGCATCAGCATTGGACAGGAGTTTGCTCAGAGGTTTGGACAGGACAGGTGGCAAGATCAGGACAGACGCCGAGATCAGGACAGACGCAGAGACTATTATCATAGACAAAATGACTACGATTACGACTACAGATACAAACCTTCGGAAGATGTTGTCTATGACGAACTGAGCAGGAGTCAGCCCTTACAGAGTGTCTACTTCTTCAAAGGAGATATGTACTACCGAGTGAATCTCCGAACCAAGCGGGTTGACTATGCAAACCCTCCATATCCAAGACCTATTGGAAAATACTGGCTTGGCTGCAAAGACATGCCAGGAGCAGAAAAGAGATGAGTCCAACAGTAAACGACTGCCATTTAATAGCATTTATCATACAAAAATAAGCTGCATTTGTACGATCAAAAATAAGGGTGATCAGTAGGGCCTTAGAATCTCTCCACAGATTTCCACACAACTGGAATGATATCATTCATAATGTTCTACAAGTCGCCATCCTTAATGTCTAATCTGATCTGTATTCCTGATTGTTGTGGTGATTGATTAAGCTCAGTGGACATCATGCAGTTTTTAGTCTAAAACATTACATTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_04790857_04794136.mRNA True 2857 mRNA 0.42 9 4789971 4794394

Neighbor

gene id symbol gene type direction distance location
CI01000072_04778819_04782897 NA coding upstream 6524 4778819 ~ 4783447 (+)
CI01000072_04757636_04762507 NA coding upstream 27464 4757583 ~ 4762510 (+)
CI01000072_04738344_04748841 A2ML coding upstream 41070 4738291 ~ 4748901 (+)
CI01000072_04721539_04727645 A2ML coding upstream 62233 4721114 ~ 4727738 (+)
CI01000072_04683704_04714952 A2ML coding upstream 74844 4682826 ~ 4715127 (+)
CI01000072_04831647_04834194 NA coding downstream 37163 4831557 ~ 4834707 (+)
CI01000072_04852708_04855831 NA coding downstream 58040 4852434 ~ 4855921 (+)
CI01000072_04861662_04880150 MYO1C, MYO1CB coding downstream 67268 4861662 ~ 4880460 (+)
CI01000072_04883669_04888061 NA coding downstream 89275 4883669 ~ 4889286 (+)
CI01000072_04891865_04915635 SLC43A2 coding downstream 97471 4891865 ~ 4915686 (+)
G286676 NA non-coding upstream 19578 4770107 ~ 4770393 (+)
G286675 NA non-coding upstream 20669 4769047 ~ 4769302 (+)
G286651 NA non-coding upstream 163620 4623612 ~ 4626351 (+)
G286653 NA non-coding upstream 169015 4618397 ~ 4620956 (+)
G286595 NA non-coding downstream 11284 4805678 ~ 4805882 (+)
G286565 NA non-coding downstream 39251 4833645 ~ 4895601 (+)
G286573 NA non-coding downstream 108586 4902980 ~ 4906118 (+)
CI01000072_04974135_04987086 ANKRD13B non-coding downstream 193979 4974135 ~ 4990194 (+)
G286695 NA non-coding downstream 196967 4991361 ~ 4991885 (+)
CI01000072_04338747_04342064 SDHD other upstream 446705 4338719 ~ 4343266 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other upstream 557550 4224789 ~ 4268148 (+)
G286470 NA other upstream 614320 4169104 ~ 4175651 (+)
G285428 NA other upstream 813757 3970257 ~ 3976214 (+)
G286564 NA other downstream 8059 4802453 ~ 4802948 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008566 vtna coding NC_007126.7 CM002899.2 28202170 ~ 28208926 (+)