XLOC_008566 (vtna)


Basic Information

Item Value
gene id XLOC_008566
gene name vtna
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 28202170 ~ 28208926 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017103
ACATTCTCTGTGAAACACCAGGATGAGGGTTTTTCTTCTGCTTCTCGTACTGCTTTCTTTTGCAGACGCGGCTGAAGAGTCATGTATTGAGCGCTGTGAAAATGGGTTTGACGCCACCAAAAGCTGTCAGTGTGACTCGATGTGCACATACTACAAGAGCTGCTGCACCGACTATGAGTCCTTATGTCGTATCAAGGCTCGTGGAGACACCTTTCCTTCTCACCCCGAGGATGATTATGATGAGGAAACAAACAGCACAGAGGTTCCAATCAGATCTAGACCGCAGGTCAGAGTTTTGTCTCCATCTCCTTTGGAAATATCCAGCATGGTAACACCAGTTTTGGATACAGCGAATGAGCCAACACCAGTCGTTGCCACTGCTGCCACTCCAACCAATAAAAACCCTGCCACAACACCAGGTGCAACCACAACTGCTCAGCCCACACCAACTAAAGCCAAAGACCCTGATGCAGAGGTGTGCAGCGGCAGACCCTTTGATGCCTTCATGCAGCTCAAAAATGGCTCTATATATGCATTCAGAGGTGAATATTTTTTTGAGCTAGACGAGAAATCGGTATTACCGGGTTACCCAAAGCTCATCGAAGACATCTGGGGAATAAAAGGTCCAATTGATGCTGCTTTCACTCGCATAAACTGCCAAGGAAAAACATACATCTTCAAGGGTAATAAATACTGGAGGTTTGATGATGGTGTATTAGATGATGACTTCCCACGAGACATAGCTGTGGGATTTGAGAAGATACCGGATCATCTGGACGCTGCCTTTGCCACTCCTGCACAcagccatcatggcaaagagaaggtttatttttttaaggGAGATCAATATTACCATTATGAGTTCAAGCACCAGCCATCCCATGAGGAATGCATTAAGATGTCACTGAGATCTCCCTCAATGCTCTTCAGAAGATACACCGATATATACTACGACCGATGGACTGAGCATTTCAACCAGCTTTTTGGTGGAGCTCAGAGTCATCACGGCCATCACTTCATCAACAGAGACTGGATTGGTATCAAATCCCCAGTAGATGCTGTGCTAGTCGGCAGACTCTACGTCACTCCGAGATGGCAAAACAGAAGGCGCCAGGACAGAAATCGTCAGGACTGGGACCAGCAGCAGGGTCAGCAATATGGGCAGCAGTGGGACCAGCGTTATGGGCAGCAGTGGGGCTCCAGACGCAGACAGAACAGATCACCCTACTGGGAGAGCATGGCTGAAAGGGGAATCAGCATTGGGCAGGAGTTCAGTCAGAGGTTTGGGCAGGACAGGTGGCGAGACCAAGACAGACGCAGAGACTACTATTATGACAGACAAAATGACTACGATTATGACTACAGATACAAGCCTACTGAAGACATCGTCTACAACATACTGCGCAGGAGTCAGCCTTTACAGAGTGTCTATTTCTTCAAAGGAGATAAGTATTACAGAGTGAATCTCCAAACGAAGCGTGTTGACTATGCCAACCCTCCATACCCAAGACCTATTGGAAAATACTGGCTTGGCTGCAAAGACACGTCGGGAGCAGAAAAACGATGAGTCCATCTATAAAACACTGCCATTCAATAGTATTtatcatacaacaaaaataaGTTCCTTTATACAATATCTGTGCTGGTTTTCACACTAATAGAAAGACGCTATTCATAATGTTTTACAGGCCACCGTAGGAACTACTCTGAGTTATATTCTTACTCATGCTCAGTCATCATGTAATTTTTATTCAAAGTATAACAGCTTTAATGAACCAATATATGGATTTGATCATATTAGAATTGtactaatatgaaaataaaaagatCGTCTGCAATCTTCAATAAACATCAA

Function

symbol description
vtna Predicted to enable polysaccharide binding activity and scavenger receptor activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in Churg-Strauss syndrome; granulomatosis with polyangiitis; and thrombosis. Orthologous to human VTN (vitronectin).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005575 cellular_component cellular_component
GO:0030247 polysaccharide binding molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-440 Predicted to enable polysaccharide binding activity and scavenger receptor activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in Churg-Strauss syndrome; granulomatosis with polyangiitis; and thrombosis. Orthologous to human VTN (vitronectin).

Ensembl:

ensembl_id ENSDARG00000055388

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017103 True 1855 mRNA 0.45 8 28202170 28208926

Neighbor

gene id symbol gene type direction distance location
XLOC_008565 slc46a1 coding upstream 15641 28175638 ~ 28186529 (+)
XLOC_008564 NA coding upstream 38203 28160893 ~ 28163967 (+)
XLOC_008563 unc119a coding upstream 76946 28106498 ~ 28125224 (+)
XLOC_008562 crybb1l3 coding upstream 97767 28096152 ~ 28104403 (+)
XLOC_008561 NA coding upstream 342151 27857395 ~ 27860019 (+)
XLOC_008567 NA coding downstream 13505 28222431 ~ 28228434 (+)
XLOC_008568 myo1cb coding downstream 59209 28268135 ~ 28352897 (+)
XLOC_008569 si:dkey-118k5.3 coding downstream 146097 28355023 ~ 28365389 (+)
XLOC_008570 slc43a2a coding downstream 159718 28368644 ~ 28405742 (+)
XLOC_008571 pitpnaa coding downstream 201738 28410664 ~ 28425011 (+)
XLOC_008463 BX663520.1 misc upstream 6949888 21252191 ~ 21252282 (+)
XLOC_008560 NA non-coding upstream 395801 27803733 ~ 27806369 (+)
XLOC_008559 AL935164.1 non-coding upstream 407357 27794699 ~ 27794813 (+)
XLOC_008558 NA non-coding upstream 476508 27710330 ~ 27725662 (+)
XLOC_008573 NA non-coding downstream 339700 28548626 ~ 28551677 (+)
XLOC_008574 BX088540.1 non-coding downstream 389721 28598647 ~ 28627902 (+)
XLOC_008583 BX537104.1 non-coding downstream 952730 29161656 ~ 29271467 (+)
XLOC_008587 NA non-coding downstream 1344117 29553043 ~ 29643810 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04790857_04794136 NA coding CI01000072 null 4789971 ~ 4794394 (+)