RNA id: CI01000072_04861662_04880150.mRNA



Basic Information


Item Value
RNA id CI01000072_04861662_04880150.mRNA
length 3847
RNA type mRNA
GC content 0.48
exon number 29
gene id CI01000072_04861662_04880150
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4861662 ~ 4880460 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGATTTTTCAAATATTGGCGATCTAATGCGGAAAACCCAGGCCTCCATTGTGGAGAAGGGTTTTCTCTTTAAAAATACAGATGCTGTAATAGATTCTGTGGGCAGTGACGGAATCCGGGTCATGATGGAGAGCGCCCTGACAGCCAGGGACCGGGTGGGCGTGCAGGACTTTGTCCTGCTGGAGAACCACACCAGCGAGGTGGCGTTCATCGAGAACCTCCGCAAGCGCTTCAAGGAGAACCTCATTTATACGTACATTGGCTCAGTGCTGGTGTCCATGAACCCCTACAAAGAGCTGGAGATTTACACTAAACAGCATATGGAACGATACAGGGGCGTCAATTTCTATGAAGTCTCACCTCACATTTATGCCGTGGCTGATAATGCGTACCGCTCCATGCGGACTGAGAGGCGGGACCAGTGCATCCTCATCTCGGGTGAGAGTGGTGCTGGCAAGACAGAAGCCTCCAAGAAGGTTCTGCAGTACTACGCCTTCACCTGCCCTGCCAGTGAGCATGTGCAGACTGTCAAAGATCGCCTGCTACAATCCAACCCTGTGCTGGAGGCTTTTGGAAATGCGAAAACTTTACGAAATGACAATTCCAGTCGCTTTGGGAAATACATGGACATTCAGTTTGACTTCAAGGGTGCTCCGGTAGGGGGTCACATCCTGAATTACCTGCTGGAGAAATCACGTGTCGTACACCAGAGCCACGGTGAGAGGAACTTCCACATTTTCTATCAGCTCATTGAAGGGGGAGAGGATGATCTGCTGAGGAGGCTGGGCCTGGAGAAGAATGCCCAACAGTACCAGTTTCTGGTGAAGGGTAACTGTCCCAAAGTGAGCTCCATAAACGACCGAAATGACTGGAAGATAGTGAGGAAAGCCCTGAGCGTCATTGGCTTCACTGATGATGAAGTGGAGGAGCTTTTGAACATTATTGCCAGTGTACTACACTTGGGGAATGTCCAGTACGGAGGCGAGGACAGTGGCAGTTCCTATATCACTACAGACACACAGATTAAATACTTAGCCAGGTTGGTAGGTGTTGACGGCACTGTTCTTAAAGAGGCTCTAACGCATAAAAAGATCATTGCCAAAGGAGAAGAGCTGATGAGTCCTCTAAATCAAGAGCAGGCCGCTTCAGCACGGGATGCCTTATCTAAAGCCATATACGGTCGTACTTTTACTTGGCTGGTCAACAAAATTAATGTCTCTCTGGCCTTCAAGGACGATTCATTCAGCAGTAAGAACGCCTCTGTCATTGGTCTGCTTGACATCTATGGTTTTGAGGTCTTTCAGAACAACAGTTTTGAGCAGTTTTGTATCAACTATTGTAATGAGAAGCTGCAGCAGCTCTTCATTGAACTGACTCTGAAGTCGGAGCAGGAGGAATATGAAGCTGAGGGAATCACGTGGGAGCCTGTGCAATATTTTAACAACAAGATAATTTGTGATCTTGTGGAGGAGAAGTTTAAAGGAATCATTTCCATCTTGGATGAGGAGTGTCTCCGGCCTGGAGATGCCAGTGACATCACCTTCCTGGAGAAGCTTGAGGACACCGTCGGTGGCCACGCCCACTTCGTAACTCACAAGCTGGCTGATGGAAAAACCCGTAAAGTGATGGGTCGTGAGGAGTTCAGACTGAGCCACTACGCAGGAGAAGTCAACTATAATGTGAACGGCTTCCTGGACAAGAACAATGATCTCCTTTTCAGAAACCTGAAGGAGCAGCTTGGCCTCAGTCCACGAGATTGCGAATCTTCGCTTGCTACCTACACTGTGAGGAATGCCCTGACACTGTTGGTACCCCCTTCACTTTATGTGACTGTGTGCAACCCTGAACCCCCACCCGATCCCAGTGCCCACTCCACGGAGCTCCATTGGCTGAGTGTGGGTGGGCTGCTGTTTAGTTGTTTGCTTGCATTGTTGACCACTGGCTTCTCCCACATTGTCACTGCCTGGCTGGACTTGCACACTGTCACTTGTGTTCTTGCTTGTTTCTCACTGTCCTCTTTTTCTTTTTCCTTCGCTCCGTTGGCCTGCTGCGACCAGGCAGCAACCCAGTTCAAGAACAGCCTGGCGAAGTTGATGGAAATACTGATGTCTAAGGAGCCGTCTTACGTGCGCTGCATCAAGCCTAATGATGCCAAGCAAGCAGGGCGCTTTGATGAAGTCCTCATCAGGCACCAAGTAAAATACCTTGGTCTGATGGAAAACCTTCGAGTGAGGAGAGCTGGGTTTGCATATCGCCGTCGCTACGAGACCTTCCTACAGAGGTATAAATCACTGTGTCCAGACACTTGGCCAAACTGGAATGGCCGCCTGGTCGATGGAGTGTCCACACTCGTCAAGCACCTTGGCTACAAACCCGAGGAGTACAAGCTCGGCAGGACCAAAATCTTCATCCGCTTCCCCAAAACCTTGTTCGCAACCGAAGATGCACTAGAAGTCAGAAAACACAGCCTTGCTACCAAACTGCAGTCATCCTGGAAAGGTCACAGTCAAAAAACCAAATATCGTAAAATGCGACAATCAGCAATCCGGATCCAAGCCTGGTGGAGAGGTATTCTGGCCCGCAGGGAAGCAAAGCGTAGAAGAGAGGCTGCCAACACCATCCGCAGGTTCATAAAAGGCTTCATCTACCGCCACCAGCCACGTTGCCCAGAGAACGAGTACTTCCTGGACTACGTTCGCTACTCGTTCCTAATGAAGTTGCACAGGAGCCTGCCCAAAACAGTTTTGGATAAGAGTTGGCCAACGCCACCTCCCGCCCTAATCGAGGCTTCAGAGCAGCTCCGCAAACTCTGCATGCAGAACATGGTGTGGAAGTACTGCAAGAATATCAACCCCGAATGGAAGCACCAGTTGGAGCAAAAGATGGTAGCAAGTGAAATCTTCAAGGACAAGAAGGACAACTACCCACAAAGTGTCCCAAAACTTTTTGTGGGCACAAGGCTAAATGGGGAGGACATCAATCCTAAAGTGCTACAGGCTTTGGGAAATGACAAGATGAAGTACGCTGTTCCAGTGACTAAGTATGATAGAAAAGGATACAAAGCTCGCAACCGACAGCTCCTGCTCATGGCGAACAGCGTCATTATTGTGGAGGAGGCCAAAGTGAAACAGCAGATCGACTACAGCTCACTGAAAGGGATTTCTGTCAGCTCTTTAAGTGACGGCATGTTCGTTCTCCATGTTGCTTCTGAAGACAATAAGCAGAAAGGTGATGTGGTGCTTCAGAATGAGCATGTGATCGAGACGTTAACCAAAGTGGCTATCTGTGCTGACAAGATCAACAGCATTAACATTAACCAGGGAAGACTGCCCCTCGCCTCAACTCAAGATGATGGACGAGTCGTGACCAAGCACCTCCTGCGTTCTCACATGATCTTCCAGATATGCTCTTTAGTTCATCAATCACATGACTACAGGCAGAGCTTAGCTCTGCCAATGAGACGCCAGCCAGCTGCACCAAAGGCCTCTGCTTTCAGTTGTGAAAATCCAGCAACTTATTTATGTTTTGGGGTTTAATACTGTTATATGAATATTATGATTTTATACGTCGAAGCCAAGAAATAACAATATATATATGTGCATTTTTCCTGCACTCTGTCTAGCTTTTTTTAGGGGATGTTGATTTGTTAGAGAAGGTGACCTCAGCCACGTTAACGAGGAAAATCAGGGTTCATAATGAGTAGTTATTCGCTTCATTTCTATTTATGTTCACACGTGATTACCTTTCCATGCATTCTGCAATCCAAACCTACTCAGACCCAGTACACTTTTTCTTCCAGTGAATTACTGTCATTGTAATGTGAGTTATAATTACTTGGTAACTCAA

Function


GO:

id name namespace
GO:0032835 glomerulus development biological_process

KEGG:

id description
K10356 MYO1; myosin I

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU324883 lncRNA upstream 55780 4805678 ~ 4805882 (+) True G286595
TU324973 lncRNA upstream 91269 4770107 ~ 4770393 (+) True G286676
TU324972 lncRNA upstream 92360 4769047 ~ 4769302 (+) True G286675
TU324847 lncRNA upstream 112875 4748406 ~ 4748787 (+) True CI01000072_04738344_04748841
TU324947 lncRNA upstream 235311 4623612 ~ 4626351 (+) True G286651
TU324861 lncRNA downstream 22520 4902980 ~ 4906118 (+) True G286573
TU324993 lncRNA downstream 107913 4988373 ~ 4990194 (+) True CI01000072_04974135_04987086
TU324995 lncRNA downstream 110901 4991361 ~ 4991885 (+) True G286695
TU325032 lncRNA downstream 153080 5033540 ~ 5033825 (+) True G286722
TU325043 lncRNA downstream 171588 5052048 ~ 5052262 (+) True G286732
CI01000072_04852708_04855831.mRNA mRNA upstream 5741 4852434 ~ 4855921 (+) True CI01000072_04852708_04855831
CI01000072_04831647_04834194.mRNA mRNA upstream 26955 4831557 ~ 4834707 (+) False CI01000072_04831647_04834194
CI01000072_04790857_04794136.mRNA mRNA upstream 67268 4789971 ~ 4794394 (+) True CI01000072_04790857_04794136
CI01000072_04778819_04782897.mRNA mRNA upstream 78215 4778819 ~ 4783447 (+) True CI01000072_04778819_04782897
CI01000072_04757636_04762507.mRNA mRNA upstream 99155 4757583 ~ 4762507 (+) False CI01000072_04757636_04762507
CI01000072_04883669_04888061.mRNA mRNA downstream 3209 4883669 ~ 4889286 (+) True CI01000072_04883669_04888061
CI01000072_04891865_04915635.mRNA mRNA downstream 11405 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
CI01000072_04924865_04927684.mRNA mRNA downstream 44405 4924865 ~ 4928530 (+) True CI01000072_04924865_04927684
CI01000072_04974135_04987086.mRNA mRNA downstream 93675 4974135 ~ 4989278 (+) False CI01000072_04974135_04987086
CI01000072_05082925_05093301.mRNA mRNA downstream 201891 5082351 ~ 5093789 (+) True CI01000072_05082925_05093301
TU324877 other upstream 29874 4829398 ~ 4830997 (+) True G286589
TU324852 other upstream 58714 4802453 ~ 4802948 (+) True G286564
TU324804 other upstream 99152 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 518396 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 518479 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017108 True 3210 mRNA 0.48 31 NC_007126.7 28318005 ~ 28349964 (+)