RNA id: CI01000072_05082925_05093301.mRNA


Basic Information

Item Value
RNA id CI01000072_05082925_05093301.mRNA
length 1887
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01000072_05082925_05093301
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5082351 ~ 5093789 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATATAAAGACATTTTCAGATGCTGCTCGGCACTAGCGAGTAGCCTCTTTTTTAGATTCTCTTGCTTGTGCATTTCAGCCCGCAGGATGAGAAAATAGACGCAGGATCCGTCTTAGAAGGGGTTGTTACGTAAACATGATTTGCCAGCTGTGTTTGAAGATTCACCCCCACCCCCTCAGACATTATACGGGGGACCAATAACCGATTCGTCGCTGTCGCCCACCTTGTTCACTCACATCCTACAATGCAATACTCCCACCGGTTTTCAGATTAAGTGCACAGTTTTTTTCTACAGCAGTTTTTGATAGGCTCAGCAGAAAATACATTTAGGGTGCGCTGCGTTCTGCTTCCGCATCATTTGTTTGTTTCGCCTCTAATCATGATTATGGGTCGGGGCGATCGTTTCTTCCTCCTCCCTGGGTCCATATCTCTCATCAATAGTTACAAGTCATTGATTACCCATGCAACCCTCAGCCCATTGATCACCGTACGATCACTTCAAAATGAAGGGGGCGCTGCTTCAGTTTTTTCTTTAATGCACTGCGTCAAAGAAAAAAAAAAATCTCATGCAGGATGGCGAGGATTTGGGAGGGTGTTGTGAAAGGCAGCCCCACATTGGATGATTTGCTCGGCTTGTCTGCCTTGGAATGGAGGACGGGACCTGAGATGAATATGGATGAGATGAATGAAAGAAGCAATGCAAAAGCTTCTCCTCGAGTCTTCGCGCTTGTTAGAACAAAGCATGCTGCTTTCTCTCACGTGCAGCAGAAAGCGAAGGAAGGCGAATATTTCTTAAAGGTGCTGATTCCAAGCTACGCCGCAGGCTCCATCATTGGCAAGGGTGGTCAGACTATTGTCCAGCTACAGAAAGAGACCGGGGCCACCATCAAGCTGTCCAAATCCAAAGACTTCTACCCGGATGTTCTTAGGGATGGGGTGACAGAGGAAACGAGAAGTGGTGGGGGGCTTCTGGGCTCTTACTTAAAAGGGCTTTGTGCGATTTGCTCATCCTCCCATCATCCTGGCACGTCCAACAGGGCACCTCTGTCCCTTTCCCCTTGGGATGTAGAGCACAGAGCTATGGCCAGCCATGGCAGATGCCAAATGCAAGACACCTCCTACCCACCCCCCCTTTCATTGGTTTTGGCAACCTTGAGTGCTCCAATGTCTAGAGTGAGGGCATGTAAAAGCACCACCATTGTCAGAGGCGGCGGGATAGTCAGCATCTGGGCTGTGAAGGAGAGACGAGGTACCCTTAATCCCTGTGGCTTTGTTTTCTTTTTCAGGCTCGTGACGTCATCTTCTGTGGCCGTTAGCCCACAGTGCCAGCCAGTGCCTGAGACTCACACAGTCAAACCGTCTTGTACAAAAGAGCCTTGCTTTCCAGAGCGAGTTTGACCCGAGTCTCATCATAGACAGAGCGATATAGAGAGAAACACTTAGTGAGGGGGATGATGGGAGTGATGGCGCAGACAGTGATCTTGAAAATGATGAAGATGCTAGTACATCAGAGTACATTTGTGATATAATTACCATGTTGCCCACTTAGCCTGCTGACGCTTCCTATTAGGTATGACTAGACCTTTTTCAGTGATCATCAGGAAGATGAAGTTTTTCTCACATCACTGAAGTTTTTCTTTGTACAAACATAATATTACAAATATAAGTACAAGACATACAACTAACTGGATTTAATATATATTGAAATTCTAATACATTTTTATTTTATTTCACATAATAATTAAGTGTCCGAAAAGTATATTCTTCAAGGTATATTATTTAGGTACTCTTTTTAGAAAAGCTAAAGGGGGTCCTGGTTACCCTCTTATTTTCATTTCTCTTTCCTCCTGGGTGTTGTACTTTTGCTGGCTTTTCCGTCAGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325044 lncRNA upstream 29691 5052434 ~ 5052660 (+) True G286733
TU325043 lncRNA upstream 30089 5052048 ~ 5052262 (+) True G286732
TU325032 lncRNA upstream 48526 5033540 ~ 5033825 (+) True G286722
TU324995 lncRNA upstream 90466 4991361 ~ 4991885 (+) True G286695
TU324993 lncRNA upstream 92157 4988373 ~ 4990194 (+) True CI01000072_04974135_04987086
TU325059 lncRNA downstream 29092 5122881 ~ 5127232 (+) True G286746
TU325039 lncRNA downstream 49755 5143544 ~ 5147539 (+) True G286728
TU325092 lncRNA downstream 107385 5201174 ~ 5201409 (+) True G286776
TU325095 lncRNA downstream 108186 5201975 ~ 5202272 (+) True G286779
TU325094 lncRNA downstream 113588 5207377 ~ 5208102 (+) True G286778
CI01000072_04974135_04987086.mRNA mRNA upstream 93073 4974135 ~ 4989278 (+) False CI01000072_04974135_04987086
CI01000072_04924865_04927684.mRNA mRNA upstream 153821 4924865 ~ 4928530 (+) True CI01000072_04924865_04927684
CI01000072_04891865_04915635.mRNA mRNA upstream 166665 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
CI01000072_04883669_04888061.mRNA mRNA upstream 193065 4883669 ~ 4889286 (+) True CI01000072_04883669_04888061
CI01000072_04861662_04880150.mRNA mRNA upstream 201891 4861662 ~ 4880460 (+) True CI01000072_04861662_04880150
CI01000072_05115672_05132153.mRNA mRNA downstream 21770 5115559 ~ 5132273 (+) True CI01000072_05115672_05132153
CI01000072_05256653_05265169.mRNA mRNA downstream 162588 5256377 ~ 5265203 (+) True CI01000072_05256653_05265169
CI01000072_05285816_05295678.mRNA mRNA downstream 191986 5285775 ~ 5296457 (+) True CI01000072_05285816_05295678
CI01000072_05315380_05336326.mRNA mRNA downstream 221591 5315380 ~ 5336957 (+) True CI01000072_05315380_05336326
CI01000072_05348632_05350857.mRNA mRNA downstream 254771 5348560 ~ 5351837 (+) True CI01000072_05348632_05350857
TU324877 other upstream 250563 4829398 ~ 4830997 (+) True G286589
TU324852 other upstream 279403 4802453 ~ 4802948 (+) True G286564
TU324804 other upstream 319841 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 739085 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 739168 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00013572 True 1488 mRNA 0.58 4 CM030125.1 36737477 ~ 36782810 (-)