RNA id: TU325039


Basic Information

Item Value
RNA id TU325039
length 3972
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G286728
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5143544 ~ 5147539 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTATTGTTTATTATAATTTTAACTGCTTAAGTGTCCAAATACTTTGTGGGGCCACTGTATATTGTTTATAGATTTGTATGACATCAAAATGACTGAAGTACTATATTTCTACAGATGCATCATTATAAAATGCAATTATGTGCAGAAAAAAAGTTGAAGACTGAAAAAATGGCTGAAAATCTGTCACTACAAATGTGTAAGAGTAAATCATTTTGATATGCAATCTGAGCAACAGCTTTCTGGCTGCAAATAGGCCTCAGGAATGCATGAGCCGTAGATCTAAACAAGCAGAGCTGTCCCTCTTGTTTCCTCAGCTTAACAACAGGTTTCTGTCTGTGTGGTGGTGCTGAAGTGAACAGCATGAATTCAGCAGGAAATCTGTACTTTTAAATAGGGCTGACTCCTTAAAAACAGCTAGTATACAGAATCAGTCAGTGTGACGCAGTCTAATCAATTTAAAGCTAGTGCGTCTCGGATACATGAAGGCTTGTGCTGATACAGAGAGTAGCTGTCACGTCAAAGCGAGGTCTGGCCCACAGGAAGAGTATAAAACAAAAGTCAGCAATCTGAGTCACAGCAGAAAACCACTTTGTCCTCGTTTTCCCCCAGATAACTTTGTGTATGAAAATATATCAACTGAATATACAATATATATATTCCTTTTTGTATAATCAGTGACTAATGCTAGTCTTCAATGTACAAATCTGACCTTAAATACTGTTGCTAAGACAAAACCAAATCAGATGGTGGTAAACTAACTGTGGTCCATAAGAATATGTCCTTTTATCAGCAATAATGTTCGAAACTTTATAAGCTACCTTTTTATGGCTTTGATATATTTGTTTGAATGTTGCGACATGTATTTTGACAAAATAGTACAAAAGTGACAAAAACAATTGATTAATCACTCCAATTAATGTACATTTCGAACACATTTCTTCTCAGTTACTTGTTTGTGTTTTAAGAAGTGCAATTTAGAAAGCAGACTGTACTACGCTGAAGCAAGAAAATGCTTTCTTATCCTACTGTGAAAGAAAACCGCAGGCTTCCAAGAAGACATAATCATTGTTATTCAATTATATATAAACCCCACCCCTCAGATTTAAACTCTAAATTCTGATTTAATTTTGCTCGCTTTTCTTTATTTAAAGAGTATTACATTTCCTTAAGTGGAAATTTTGACAGACCAAAATATCCATCCAGTTCCATTTCACTCAATTTAAACTGGTTTCACGCAAACACTGAAAATGATTGTAATAGTTTTGTATGTTTTTTTGTTTGTTTGTTTGTTTGTTTCTTGCTGTTGTAATATTTCTAACAAATGAAGCTGATAAATTATCCTAGAGATCGTTCGTAATATAAAGAATAACTTTTAACATCAGTGTTTTATGAGTATATGTACATAAGATAAAGAAATAAATTAAGAAAGTTGCAATGCAAAGCTGTGATTTTAAAGCACTGTAGCGTGTACAGTGATTTGTTTTTATCAATTTTATGGTACATATGATATGTTCTGCATTTCTGCAGTTGTTGTTTTCTTTATGTTCATGAGCATATGCTTTAATAAATATGTTTTTTACTGTATATTGCTGAGGCCCAAGCCATTCTTATGACAAATTACAGTAGAGTGAATTTACAAAGCAACCTGCATATAGGTCATGCTTTCCTTATCTGTCCAGTGTGTATTTTTTCTAATTATCCATGAATTCTTGCTTCTATCTGTAATTAGCTTTGGTGCTGTTGTACATGGAAGTCTATCTCAAAAGTCTTTCATAGGTGATGTACGTTAGCGCTGATGAACCCTGCTGGGCTAATGAGGGATATAAATGCACAAGTTCGAGTCTGTCTGTGCAACTGCGCACCTCTGAGGGGCTTAATTGGGTCACTGCTTGCCACAGATATGACTAGCACAATGAAGACAACAATTTATGCTCCCAAGACGCAAGATAAAATAAGAAACGTCTTAGTTCTTTTATAAATCTCTCCACGCTTTCTGTGTAGGTTGACGGTGCGAGACACCCGGCACGCAATGATAAACCTACATGCCTGTGGAGGAGGGTCTTTGTGATAAAAGACTTGCCGGAACATACTCGATAGAAAACTGTAAATTGAAATATGTATCAAAGTGCATACCAAACAAAATAACTGTCACTTTTTTTCTATTCCAGCTTAATATGATGAGACAACCAAGTAAACCAGAAAAGAAAAATATAAAAGTCCCCTATATATATATATATATATATATATATATACGGTAGTGGCCAAAAGTGATGTCTGGAGGGGATATTTGCACAATAGGTGCTTTTTAGGTTCTATTAAACAATCAAAATATGAGGAGTATGTTACTCAAGTTACTCAACTTCTTGGAAGACTTCCAAAATTTACTTATCAAAATCCAGGTTTATAATTTCCCACAGGTCTCATCCAGGTCTTTAGAAGCTGCTTTAAAGGTGGTCCCATATTCAGGAGATTTTCATTCTCCTGTCAAAATGCTTATTAGTTTTCCTCGAGAAGCCATAACACTTTACATTCTGCATGGTAGTGGTCTCACTGTGCTTTAAAATAATTCTGTGGACATTGTGACAATTCACATCCTGGCTGCACATGAACAATATCAAAAACCGCCAGATTTATCCATTTTAACAATATCTTCCTTGGTTGCAGAGGACAGCTCCTTCCATCTGGCCTTTTTGACTAAAACTATGGTGGTGAGAAAGCTCAAAGCACTGCAATTGGAGAAAACACACGCAAATAGAAAAAAACTATTCCTTCAAATTTTTTAAAATCTAGTTCTGTAACACTATCCAAACAGCTGCTACTATACTTAATAGAGATACATGTAAATGAAACTTGTAACATGCTCAGTCCACAAAATATACCCTTTTCCAATATAAAGCCAAATGCACAATTTAATTTTTTTTTTTTTTCTGAAAGAACAGCATATTAGTATACCTCATACACCATATAAAACCCACTAAATAACATCTAATAATATAGCTAATACTTGTCACATAGTGATTTATTGCATTACAGGCTGGAAATAATGAGTGCAAGATTGGTATGACCACTTGGCCAAAATTGACGTCTACACAATTTGGTATTTTTCATTGCATCATGACATTGATACAATTGGAATGTGGAATGCGGACATTAGCTTTACATTCCAGGCACAACTTCACAACACTCATACAAAATATTTATTAAATATTTATTAAAATGTTTGAATAAAGTGCGAAGAACCAATTTACCTTGGTCGGAACATCACTTTTGGCCACCACTGTGTGGATATATATATATAAGGTACGAGAGGCTGTGCTGTATTGTGAATAAGTCACGGCTGAAGGGCGTTGTTAGGCATGACGCGAAGCGGAAGCTTTTATAAAACAGTTACCACACAATACAAATATTAAAGCCAGAAATATGTAACTTATCAATGCAACTTTCATGAAGTAAACTTTTTCTAAAAGCCTTCCTTCCTCCAGAAAAAATAGTCCCTGACCGTGAACAGCAACAGAAGTTACATTATTACGCCATTAGATGGCGGCAAAGATTGTCTTTATGAGTGTGTCAGTCAGTAGCGAAGACTTTTACATTGAAAAGACTGAATTGTTGTGAACACGGAACAAGATGCAACTTACAAATGCTTTGACTCGCTCTGTCAGTTACGTAAAAAACCCTTAAATGTTAAAAGGACAAGATAATACATCGGACATTTAAACAGATTTTTTATTATGAACATAGGACTGACCTGAAGGAAAATGCTAAATCTGAATGCAGGTAATAAGCTTGCTCATTCGATCTCTTTCTCACAATACTGTTCTACATAATGCAATAAGCTTCAATGAACAATATCAATTGAGAACATACAGTTTACGTTGCTAAGAGTGGTTGCTAAGGGTGTTGTGTAGTGATACACAGAACTGTTGGGTGAAGCGGTCATAGTAGTCTATTAACCAATCAGAATCCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325059 lncRNA upstream 16312 5122881 ~ 5127232 (+) True G286746
TU325044 lncRNA upstream 90884 5052434 ~ 5052660 (+) True G286733
TU325043 lncRNA upstream 91282 5052048 ~ 5052262 (+) True G286732
TU325032 lncRNA upstream 109719 5033540 ~ 5033825 (+) True G286722
TU324995 lncRNA upstream 151659 4991361 ~ 4991885 (+) True G286695
TU325092 lncRNA downstream 53635 5201174 ~ 5201409 (+) True G286776
TU325095 lncRNA downstream 54436 5201975 ~ 5202272 (+) True G286779
TU325094 lncRNA downstream 59838 5207377 ~ 5208102 (+) True G286778
TU325098 lncRNA downstream 69173 5216712 ~ 5217096 (+) True G286782
TU325099 lncRNA downstream 70020 5217559 ~ 5217803 (+) True G286783
CI01000072_05115672_05132153.mRNA mRNA upstream 11271 5115559 ~ 5132273 (+) True CI01000072_05115672_05132153
CI01000072_05082925_05093301.mRNA mRNA upstream 49755 5082351 ~ 5093789 (+) True CI01000072_05082925_05093301
CI01000072_04974135_04987086.mRNA mRNA upstream 154266 4974135 ~ 4989278 (+) False CI01000072_04974135_04987086
CI01000072_04924865_04927684.mRNA mRNA upstream 215014 4924865 ~ 4928530 (+) True CI01000072_04924865_04927684
CI01000072_04891865_04915635.mRNA mRNA upstream 227858 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
CI01000072_05256653_05265169.mRNA mRNA downstream 108838 5256377 ~ 5265203 (+) True CI01000072_05256653_05265169
CI01000072_05285816_05295678.mRNA mRNA downstream 138236 5285775 ~ 5296457 (+) True CI01000072_05285816_05295678
CI01000072_05315380_05336326.mRNA mRNA downstream 167841 5315380 ~ 5336957 (+) True CI01000072_05315380_05336326
CI01000072_05348632_05350857.mRNA mRNA downstream 201021 5348560 ~ 5351837 (+) True CI01000072_05348632_05350857
CI01000072_05367941_05386812.mRNA mRNA downstream 220402 5367941 ~ 5387212 (+) True CI01000072_05367941_05386812
TU324877 other upstream 311756 4829398 ~ 4830997 (+) True G286589
TU324852 other upstream 340596 4802453 ~ 4802948 (+) True G286564
TU324804 other upstream 381034 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 800278 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 800361 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU157948 True 1398 lncRNA 0.53 2 CM030137.1 2427670 ~ 2520585 (+)
tiger barb (Puntius tetrazona) TU157948 True 2476 lncRNA 0.37 2 NC_056713.1 15502558 ~ 15571162 (+)