RNA id: TU325098



Basic Information


Item Value
RNA id TU325098
length 385
lncRNA type intronic
GC content 0.32
exon number 1
gene id G286782
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5216712 ~ 5217096 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TAAAAATAGTAAAAAAAACAAACAAAGAAAAACTTTACAATTTAATTGAATTTAACACTATATTAAGTGGTAACCTGGTTAATGGATTTCTTTATGAAAGTTTAATGAGATTGTTCCAGTGGTTGCTGTACAGCTCTGATAGGATCTCAGTCAATAACACTTTTATTGACAGATGTCTAGCTTGAACATCAGTGTTTACCTTCCTTCCTGGAACTTCATGTATACACACCATAAATTATTTATTAGTATTTGATCACATTGTTCCTAAGCCTTCTTGGTGTGTGCACAACAACTTACTACACACTTAGTAGTAGAAAATAATGAAAATAATGTCATTAATTACTCACCCTCATGTCGTTCTACACCCGTAAGACCTTCGTTCATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU325094 lncRNA upstream 8610 5207377 ~ 5208102 (+) True G286778
TU325095 lncRNA upstream 14440 5201975 ~ 5202272 (+) True G286779
TU325092 lncRNA upstream 15303 5201174 ~ 5201409 (+) True G286776
TU325039 lncRNA upstream 69173 5143544 ~ 5147539 (+) True G286728
TU325059 lncRNA upstream 89480 5122881 ~ 5127232 (+) True G286746
TU325099 lncRNA downstream 463 5217559 ~ 5217803 (+) True G286783
TU325100 lncRNA downstream 1247 5218343 ~ 5218542 (+) True G286784
TU325101 lncRNA downstream 2404 5219500 ~ 5219712 (+) True G286785
TU325102 lncRNA downstream 3117 5220213 ~ 5220740 (+) True G286786
TU325103 lncRNA downstream 5144 5222240 ~ 5222439 (+) True G286787
CI01000072_05115672_05132153.mRNA mRNA upstream 84439 5115559 ~ 5132273 (+) True CI01000072_05115672_05132153
CI01000072_05082925_05093301.mRNA mRNA upstream 122923 5082351 ~ 5093789 (+) True CI01000072_05082925_05093301
CI01000072_04974135_04987086.mRNA mRNA upstream 227434 4974135 ~ 4989278 (+) False CI01000072_04974135_04987086
CI01000072_04924865_04927684.mRNA mRNA upstream 288182 4924865 ~ 4928530 (+) True CI01000072_04924865_04927684
CI01000072_04891865_04915635.mRNA mRNA upstream 301026 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
CI01000072_05256653_05265169.mRNA mRNA downstream 39281 5256377 ~ 5265203 (+) True CI01000072_05256653_05265169
CI01000072_05285816_05295678.mRNA mRNA downstream 68679 5285775 ~ 5296457 (+) True CI01000072_05285816_05295678
CI01000072_05315380_05336326.mRNA mRNA downstream 98284 5315380 ~ 5336957 (+) True CI01000072_05315380_05336326
CI01000072_05348632_05350857.mRNA mRNA downstream 131464 5348560 ~ 5351837 (+) True CI01000072_05348632_05350857
CI01000072_05367941_05386812.mRNA mRNA downstream 150845 5367941 ~ 5387212 (+) True CI01000072_05367941_05386812
TU324877 other upstream 384924 4829398 ~ 4830997 (+) True G286589
TU324852 other upstream 413764 4802453 ~ 4802948 (+) True G286564
TU324804 other upstream 454202 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 873446 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 873529 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile