RNA id: TU325099


Basic Information

Item Value
RNA id TU325099
length 245
lncRNA type intronic
GC content 0.28
exon number 1
gene id G286783
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5217559 ~ 5217803 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAGTCTTCAGTCTCACGTGATCCTTCAGAAATCATTTTAATATGCTGATTTGGAAGCAGTCTTGATTATTGTCAATTTTTAAAACAGTTGTGCTACTTAATATGTTTTGTGGAAACCATGACACATTTTTTCAGGGCGAAATTATGAATAGAAAGTTTAAAAAAAACAGCATTTATTTGAAATGCAGAAAGTTTAAAAGAACAGCATTTATTTGAAATATAAATCTTTGAAATAGAAATCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325098 lncRNA upstream 463 5216712 ~ 5217096 (+) True G286782
TU325094 lncRNA upstream 9457 5207377 ~ 5208102 (+) True G286778
TU325095 lncRNA upstream 15287 5201975 ~ 5202272 (+) True G286779
TU325092 lncRNA upstream 16150 5201174 ~ 5201409 (+) True G286776
TU325039 lncRNA upstream 70020 5143544 ~ 5147539 (+) True G286728
TU325100 lncRNA downstream 540 5218343 ~ 5218542 (+) True G286784
TU325101 lncRNA downstream 1697 5219500 ~ 5219712 (+) True G286785
TU325102 lncRNA downstream 2410 5220213 ~ 5220740 (+) True G286786
TU325103 lncRNA downstream 4437 5222240 ~ 5222439 (+) True G286787
TU325105 lncRNA downstream 9742 5227545 ~ 5227864 (+) True G286789
CI01000072_05115672_05132153.mRNA mRNA upstream 85286 5115559 ~ 5132273 (+) True CI01000072_05115672_05132153
CI01000072_05082925_05093301.mRNA mRNA upstream 123770 5082351 ~ 5093789 (+) True CI01000072_05082925_05093301
CI01000072_04974135_04987086.mRNA mRNA upstream 228281 4974135 ~ 4989278 (+) False CI01000072_04974135_04987086
CI01000072_04924865_04927684.mRNA mRNA upstream 289029 4924865 ~ 4928530 (+) True CI01000072_04924865_04927684
CI01000072_04891865_04915635.mRNA mRNA upstream 301873 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
CI01000072_05256653_05265169.mRNA mRNA downstream 38574 5256377 ~ 5265203 (+) True CI01000072_05256653_05265169
CI01000072_05285816_05295678.mRNA mRNA downstream 67972 5285775 ~ 5296457 (+) True CI01000072_05285816_05295678
CI01000072_05315380_05336326.mRNA mRNA downstream 97577 5315380 ~ 5336957 (+) True CI01000072_05315380_05336326
CI01000072_05348632_05350857.mRNA mRNA downstream 130757 5348560 ~ 5351837 (+) True CI01000072_05348632_05350857
CI01000072_05367941_05386812.mRNA mRNA downstream 150138 5367941 ~ 5387212 (+) True CI01000072_05367941_05386812
TU324877 other upstream 385771 4829398 ~ 4830997 (+) True G286589
TU324852 other upstream 414611 4802453 ~ 4802948 (+) True G286564
TU324804 other upstream 455049 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 874293 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 874376 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile