RNA id: TU324852


Basic Information

Item Value
RNA id TU324852
length 496
RNA type TUCP
GC content 0.56
exon number 1
gene id G286564
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4802453 ~ 4802948 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCCACTCTCACAAGGCTCATTGCAGACAGAGCCTTTGTAACCCGGGTAGCACAAACAGGTGCCAGTTTGCAAGTCACAGTCGGCATGGTTGAGATTACAATTACAACGGCGGTCACAGGATGGACCCCACCAGCCGTGCAGACACTGACACTCCCCTGTGCGCTGCAGGCAGGGGGACACGTAGCAGTTGCATCGCAGGCTGCACTTTTGGCCCCAGTAGCCCTCGTTACACAAGCAGCGGCCTGTGGCTTGGTCACAGGTGGATGTAGCAAGGTGGCACTGACAGACTTTGGAGCAAGTGGATGTCCACCAGCCCTCCTCACAAGTGCAGTTGCCATAGACAGGGTCACATTTCCCATGACGTGTACATTTGCAGCTGTTTTGGCACAGGTTGCCCCAGCGGTTAGGCAGGCACGAGCACTCACCTGTGACTGGGTCACAGAGCCCATGAGGGTGACAGGGACAAAGCTCACGACAATCCGCCCCCCAAAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324973 lncRNA upstream 32060 4770107 ~ 4770393 (+) True G286676
TU324972 lncRNA upstream 33151 4769047 ~ 4769302 (+) True G286675
TU324847 lncRNA upstream 53666 4748406 ~ 4748787 (+) True CI01000072_04738344_04748841
TU324946 lncRNA upstream 176102 4623612 ~ 4626351 (+) False G286651
TU324947 lncRNA upstream 176102 4623612 ~ 4626351 (+) True G286651
TU324883 lncRNA downstream 2730 4805678 ~ 4805882 (+) True G286595
TU324853 lncRNA downstream 30697 4833645 ~ 4895601 (+) True G286565
TU324861 lncRNA downstream 100032 4902980 ~ 4906118 (+) True G286573
TU324993 lncRNA downstream 185425 4988373 ~ 4990194 (+) True CI01000072_04974135_04987086
TU324995 lncRNA downstream 188413 4991361 ~ 4991885 (+) True G286695
CI01000072_04790857_04794136.mRNA mRNA upstream 8059 4789971 ~ 4794394 (+) True CI01000072_04790857_04794136
CI01000072_04778819_04782897.mRNA mRNA upstream 19006 4778819 ~ 4783447 (+) True CI01000072_04778819_04782897
CI01000072_04757636_04762507.mRNA mRNA upstream 39946 4757583 ~ 4762507 (+) False CI01000072_04757636_04762507
CI01000072_04738344_04748841.mRNA mRNA upstream 53552 4738291 ~ 4748901 (+) False CI01000072_04738344_04748841
CI01000072_04721539_04727645.mRNA mRNA upstream 74715 4721114 ~ 4727738 (+) True CI01000072_04721539_04727645
CI01000072_04831647_04834194.mRNA mRNA downstream 28609 4831557 ~ 4834707 (+) False CI01000072_04831647_04834194
CI01000072_04852708_04855831.mRNA mRNA downstream 49486 4852434 ~ 4855921 (+) True CI01000072_04852708_04855831
CI01000072_04861662_04880150.mRNA mRNA downstream 58714 4861662 ~ 4880460 (+) True CI01000072_04861662_04880150
CI01000072_04883669_04888061.mRNA mRNA downstream 80721 4883669 ~ 4889286 (+) True CI01000072_04883669_04888061
CI01000072_04891865_04915635.mRNA mRNA downstream 88917 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
TU324804 other upstream 39943 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 459187 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 459270 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064
TU324705 other upstream 570032 4232318 ~ 4232421 (+) False G286474
TU324692 other upstream 626802 4169104 ~ 4175651 (+) True G286470
TU324877 other downstream 26450 4829398 ~ 4830997 (+) True G286589

Expression Profile