RNA id: TU325103


Basic Information

Item Value
RNA id TU325103
length 200
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G286787
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5222240 ~ 5222439 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCCCATTTCATTGTATCTGCTGTGCTCTTGCCGAGAGAGCCCGCCCACACTCTCTTCTGATTGGCTGTGGTTTTTTTATTTGATTATCGCTTCTCATTGTCGCGTCGCGTCTAGTGTGGACAGTCAAATTGCTCGTCGCTGGAATCTTGTCGCATCGCGTCTGGTTAGGACACGGTGCTAGCCTATAACAATGATTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325102 lncRNA upstream 1500 5220213 ~ 5220740 (+) True G286786
TU325101 lncRNA upstream 2528 5219500 ~ 5219712 (+) True G286785
TU325100 lncRNA upstream 3698 5218343 ~ 5218542 (+) True G286784
TU325099 lncRNA upstream 4437 5217559 ~ 5217803 (+) True G286783
TU325098 lncRNA upstream 5144 5216712 ~ 5217096 (+) True G286782
TU325105 lncRNA downstream 5106 5227545 ~ 5227864 (+) True G286789
TU325106 lncRNA downstream 5737 5228176 ~ 5228801 (+) True G286790
TU325107 lncRNA downstream 8548 5230987 ~ 5231229 (+) True G286791
TU325137 lncRNA downstream 56183 5278622 ~ 5278921 (+) True G286820
TU325139 lncRNA downstream 59117 5281556 ~ 5281765 (+) True G286822
CI01000072_05115672_05132153.mRNA mRNA upstream 89967 5115559 ~ 5132273 (+) True CI01000072_05115672_05132153
CI01000072_05082925_05093301.mRNA mRNA upstream 128451 5082351 ~ 5093789 (+) True CI01000072_05082925_05093301
CI01000072_04974135_04987086.mRNA mRNA upstream 232962 4974135 ~ 4989278 (+) False CI01000072_04974135_04987086
CI01000072_04924865_04927684.mRNA mRNA upstream 293710 4924865 ~ 4928530 (+) True CI01000072_04924865_04927684
CI01000072_04891865_04915635.mRNA mRNA upstream 306554 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
CI01000072_05256653_05265169.mRNA mRNA downstream 33938 5256377 ~ 5265203 (+) True CI01000072_05256653_05265169
CI01000072_05285816_05295678.mRNA mRNA downstream 63336 5285775 ~ 5296457 (+) True CI01000072_05285816_05295678
CI01000072_05315380_05336326.mRNA mRNA downstream 92941 5315380 ~ 5336957 (+) True CI01000072_05315380_05336326
CI01000072_05348632_05350857.mRNA mRNA downstream 126121 5348560 ~ 5351837 (+) True CI01000072_05348632_05350857
CI01000072_05367941_05386812.mRNA mRNA downstream 145502 5367941 ~ 5387212 (+) True CI01000072_05367941_05386812
TU324877 other upstream 390452 4829398 ~ 4830997 (+) True G286589
TU324852 other upstream 419292 4802453 ~ 4802948 (+) True G286564
TU324804 other upstream 459730 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 878974 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 879057 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile