RNA id: TU325107


Basic Information

Item Value
RNA id TU325107
length 243
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G286791
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5230987 ~ 5231229 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGAACACAAATTAAGATATTTTTGTTGAAATTCGATGGCTCAGTGAGGCCTGCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTCAATGTTAATATTATAAAGCGACGAGAATATTTTTGGTGCGCCAAAAAAAAAACAAAATAACGACTTATATAGTGATGGCCGATTTCAAAACACTGCTTCAGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325106 lncRNA upstream 2186 5228176 ~ 5228801 (+) True G286790
TU325105 lncRNA upstream 3123 5227545 ~ 5227864 (+) True G286789
TU325103 lncRNA upstream 8548 5222240 ~ 5222439 (+) True G286787
TU325102 lncRNA upstream 10247 5220213 ~ 5220740 (+) True G286786
TU325101 lncRNA upstream 11275 5219500 ~ 5219712 (+) True G286785
TU325137 lncRNA downstream 47393 5278622 ~ 5278921 (+) True G286820
TU325139 lncRNA downstream 50327 5281556 ~ 5281765 (+) True G286822
TU325155 lncRNA downstream 112980 5344209 ~ 5344435 (+) True G286838
TU325161 lncRNA downstream 154018 5385247 ~ 5386222 (+) True G286844
CI01000072_05115672_05132153.mRNA mRNA upstream 98714 5115559 ~ 5132273 (+) True CI01000072_05115672_05132153
CI01000072_05082925_05093301.mRNA mRNA upstream 137198 5082351 ~ 5093789 (+) True CI01000072_05082925_05093301
CI01000072_04974135_04987086.mRNA mRNA upstream 241709 4974135 ~ 4989278 (+) False CI01000072_04974135_04987086
CI01000072_04924865_04927684.mRNA mRNA upstream 302457 4924865 ~ 4928530 (+) True CI01000072_04924865_04927684
CI01000072_04891865_04915635.mRNA mRNA upstream 315301 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
CI01000072_05256653_05265169.mRNA mRNA downstream 25148 5256377 ~ 5265203 (+) True CI01000072_05256653_05265169
CI01000072_05285816_05295678.mRNA mRNA downstream 54546 5285775 ~ 5296457 (+) True CI01000072_05285816_05295678
CI01000072_05315380_05336326.mRNA mRNA downstream 84151 5315380 ~ 5336957 (+) True CI01000072_05315380_05336326
CI01000072_05348632_05350857.mRNA mRNA downstream 117331 5348560 ~ 5351837 (+) True CI01000072_05348632_05350857
CI01000072_05367941_05386812.mRNA mRNA downstream 136712 5367941 ~ 5387212 (+) True CI01000072_05367941_05386812
TU324877 other upstream 399199 4829398 ~ 4830997 (+) True G286589
TU324852 other upstream 428039 4802453 ~ 4802948 (+) True G286564
TU324804 other upstream 468477 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 887721 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 887804 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile