RNA id: TU325032


Basic Information

Item Value
RNA id TU325032
length 286
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G286722
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5033540 ~ 5033825 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCTGTCAGTCAATAAATGTAAAAAAAAGTAACTTGCGTTACTTATTTGAAAAAGTAACTTAGATATTTTGTTGTAAATTGAAAATGTAATGCGTTACTTTACTAGTTACTTGAAAAAGTAATCTGATTACGTAACTCAAGTTACTTGTAATGTGTTACCCTAACACTGGACATCTGACAGGAAACGTCCTAGAGAGATGAGCAAACACTCTTAAAAAAAAATGTCTTCCAGATGTAAACACGCACATCAAATAGACATCTCCGAGATATACGTATGCTGTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324995 lncRNA upstream 41655 4991361 ~ 4991885 (+) True G286695
TU324993 lncRNA upstream 43346 4988373 ~ 4990194 (+) True CI01000072_04974135_04987086
TU324861 lncRNA upstream 127422 4902980 ~ 4906118 (+) True G286573
TU324853 lncRNA upstream 137939 4833645 ~ 4895601 (+) True G286565
TU324883 lncRNA upstream 227658 4805678 ~ 4805882 (+) True G286595
TU325043 lncRNA downstream 18223 5052048 ~ 5052262 (+) True G286732
TU325044 lncRNA downstream 18609 5052434 ~ 5052660 (+) True G286733
TU325059 lncRNA downstream 89056 5122881 ~ 5127232 (+) True G286746
TU325039 lncRNA downstream 109719 5143544 ~ 5147539 (+) True G286728
TU325092 lncRNA downstream 167349 5201174 ~ 5201409 (+) True G286776
CI01000072_04974135_04987086.mRNA mRNA upstream 44262 4974135 ~ 4989278 (+) False CI01000072_04974135_04987086
CI01000072_04924865_04927684.mRNA mRNA upstream 105010 4924865 ~ 4928530 (+) True CI01000072_04924865_04927684
CI01000072_04891865_04915635.mRNA mRNA upstream 117854 4891865 ~ 4915686 (+) True CI01000072_04891865_04915635
CI01000072_04883669_04888061.mRNA mRNA upstream 144254 4883669 ~ 4889286 (+) True CI01000072_04883669_04888061
CI01000072_04861662_04880150.mRNA mRNA upstream 153080 4861662 ~ 4880460 (+) True CI01000072_04861662_04880150
CI01000072_05082925_05093301.mRNA mRNA downstream 48526 5082351 ~ 5093789 (+) True CI01000072_05082925_05093301
CI01000072_05115672_05132153.mRNA mRNA downstream 81734 5115559 ~ 5132273 (+) True CI01000072_05115672_05132153
CI01000072_05256653_05265169.mRNA mRNA downstream 222552 5256377 ~ 5265203 (+) True CI01000072_05256653_05265169
CI01000072_05285816_05295678.mRNA mRNA downstream 251950 5285775 ~ 5296457 (+) True CI01000072_05285816_05295678
CI01000072_05315380_05336326.mRNA mRNA downstream 281555 5315380 ~ 5336957 (+) True CI01000072_05315380_05336326
TU324877 other upstream 201752 4829398 ~ 4830997 (+) True G286589
TU324852 other upstream 230592 4802453 ~ 4802948 (+) True G286564
TU324804 other upstream 271030 4760311 ~ 4762510 (+) True CI01000072_04757636_04762507
TU324695 other upstream 690274 4338719 ~ 4343266 (+) True CI01000072_04338747_04342064
TU324694 other upstream 690357 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile