RNA id: TU322849


Basic Information

Item Value
RNA id TU322849
length 308
lncRNA type intronic
GC content 0.59
exon number 1
gene id G284871
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1913995 ~ 1914302 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTTTAGCTTCCTTGTTAGAGCGTCCGACTCCCACGCCGGAGACCCGGGTTCGAGGCCCGCGCAGAGAGGGTCGAGTAGGACCTGGGTAGAGGGGTTACGTTGGTGCCGTGACCCGGATGGGAGTGAGGTTTAGGGGGGTGAGTGTAACGGAGGCCAGCTAGTAGTTGCTGTGCAAGTAAACCTCACTTCTCTGATCTCAAGAGATGCTCTAGCAACTGACGCTAGGGGTTGCAGCCTTTAGCCTCCTTGTTAGAGTGTCCGACTCCCACGCCGGAGATCCAGGTTCGAGGCACGGGCAGAGCGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322847 lncRNA upstream 2634 1911012 ~ 1911361 (+) True G284869
TU322845 lncRNA upstream 4632 1909136 ~ 1909363 (+) True G284867
TU322834 lncRNA upstream 33188 1880590 ~ 1880807 (+) True G284859
TU322826 lncRNA upstream 82024 1831668 ~ 1831971 (+) True G284851
TU322660 lncRNA upstream 217703 1656852 ~ 1696292 (+) True G284694
TU322767 lncRNA downstream 2593 1916895 ~ 1919833 (+) True G284793
TU322770 lncRNA downstream 6681 1920983 ~ 1922486 (+) True G284796
TU322850 lncRNA downstream 8951 1923253 ~ 1923565 (+) True G284872
TU322851 lncRNA downstream 9810 1924112 ~ 1925189 (+) True G284873
TU322719 lncRNA downstream 23185 1937487 ~ 1939318 (+) True G284745
CI01000072_01864149_01879788.mRNA mRNA upstream 33791 1863911 ~ 1880204 (+) True CI01000072_01864149_01879788
CI01000072_01762899_01783522.mRNA mRNA upstream 130035 1762567 ~ 1783960 (+) True CI01000072_01762899_01783522
CI01000072_01724644_01730223.mRNA mRNA upstream 182835 1724452 ~ 1731160 (+) True CI01000072_01724644_01730223
CI01000072_01413987_01424254.mRNA mRNA upstream 489741 1413987 ~ 1424254 (+) True CI01000072_01413987_01424254
CI01000072_01406735_01412673.mRNA mRNA upstream 500875 1406735 ~ 1413120 (+) True CI01000072_01406735_01412673
CI01000072_02000581_02009243.mRNA mRNA downstream 85338 1999640 ~ 2009426 (+) True CI01000072_02000581_02009243
CI01000072_02016536_02023336.mRNA mRNA downstream 102120 2016422 ~ 2023361 (+) True CI01000072_02016536_02023336
CI01000072_02028275_02032319.mRNA mRNA downstream 113574 2027876 ~ 2032703 (+) True CI01000072_02028275_02032319
CI01000072_02033013_02040077.mRNA mRNA downstream 118675 2032977 ~ 2040725 (+) True CI01000072_02033013_02040077
CI01000072_02058184_02067046.mRNA mRNA downstream 143585 2057887 ~ 2067049 (+) True CI01000072_02058184_02067046
TU321805 other upstream 1562707 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 67228 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 2055955 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 2254802 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 2254802 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 2310536 4232318 ~ 4232421 (+) False G286474

Expression Profile