Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU322524 |
| length | 2166 |
| lncRNA type | read_through |
| GC content | 0.34 |
| exon number | 2 |
| gene id | G284559 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000072 |
| NCBI id | null |
| chromosome length | 5473029 |
| location | 1381743 ~ 1442788 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU322515 | lncRNA | upstream | 48028 | 1333476 ~ 1333715 (+) | True | G284550 |
| TU322426 | lncRNA | upstream | 312585 | 1068520 ~ 1069158 (+) | True | G284464 |
| TU322243 | lncRNA | upstream | 507347 | 866910 ~ 867085 (+) | False | G284306 |
| TU322244 | lncRNA | upstream | 507347 | 866910 ~ 867085 (+) | True | G284306 |
| TU322279 | lncRNA | upstream | 525866 | 855530 ~ 855877 (+) | True | G284338 |
| TU322663 | lncRNA | downstream | 144363 | 1587151 ~ 1590509 (+) | True | G284696 |
| TU322660 | lncRNA | downstream | 214064 | 1656852 ~ 1696292 (+) | True | G284694 |
| TU322826 | lncRNA | downstream | 388880 | 1831668 ~ 1831971 (+) | True | G284851 |
| TU322834 | lncRNA | downstream | 437802 | 1880590 ~ 1880807 (+) | True | G284859 |
| TU322845 | lncRNA | downstream | 466348 | 1909136 ~ 1909363 (+) | True | G284867 |
| CI01000072_01351729_01362820.mRNA | mRNA | upstream | 18704 | 1350472 ~ 1363039 (+) | True | CI01000072_01351729_01362820 |
| CI01000072_01334982_01348258.mRNA | mRNA | upstream | 33485 | 1334982 ~ 1348258 (+) | True | CI01000072_01334982_01348258 |
| CI01000072_01272628_01318779.mRNA | mRNA | upstream | 62664 | 1272530 ~ 1319079 (+) | True | CI01000072_01272628_01318779 |
| CI01000072_01238939_01264489.mRNA | mRNA | upstream | 116278 | 1238429 ~ 1265465 (+) | True | CI01000072_01238939_01264489 |
| CI01000072_01183833_01210925.mRNA | mRNA | upstream | 169531 | 1183539 ~ 1212212 (+) | True | CI01000072_01183833_01210925 |
| CI01000072_01724644_01730223.mRNA | mRNA | downstream | 281664 | 1724452 ~ 1731160 (+) | True | CI01000072_01724644_01730223 |
| CI01000072_01762899_01783522.mRNA | mRNA | downstream | 319779 | 1762567 ~ 1783960 (+) | True | CI01000072_01762899_01783522 |
| CI01000072_01864149_01879788.mRNA | mRNA | downstream | 421123 | 1863911 ~ 1880204 (+) | True | CI01000072_01864149_01879788 |
| CI01000072_02000581_02009243.mRNA | mRNA | downstream | 556852 | 1999640 ~ 2009426 (+) | True | CI01000072_02000581_02009243 |
| CI01000072_02016536_02023336.mRNA | mRNA | downstream | 573634 | 2016422 ~ 2023361 (+) | True | CI01000072_02016536_02023336 |
| TU321805 | other | upstream | 1030455 | 349124 ~ 351288 (+) | True | CI01000072_00338411_00351144 |
| TU322715 | other | downstream | 538742 | 1981530 ~ 1985140 (+) | True | G284742 |
| TU323494 | other | downstream | 2527469 | 3970257 ~ 3976214 (+) | True | G285428 |
| TU324691 | other | downstream | 2726316 | 4169104 ~ 4172093 (+) | False | G286470 |
| TU324692 | other | downstream | 2726316 | 4169104 ~ 4175651 (+) | True | G286470 |
| TU324705 | other | downstream | 2782050 | 4232318 ~ 4232421 (+) | False | G286474 |
