RNA id: CI01000072_01334982_01348258.mRNA



Basic Information


Item Value
RNA id CI01000072_01334982_01348258.mRNA
length 1323
RNA type mRNA
GC content 0.48
exon number 14
gene id CI01000072_01334982_01348258
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1334982 ~ 1348258 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGATGTTTCAAGTCCCAGGACTGAAGCTTCATCAATGGAGCCTAGTTCCAAGCTTTTTTGCTGTAGATTCGTGAGACGTTGCATCCCTCTGATCTACAGACAGGAGCTCTACCACATCCTGCGAATGACCGGACCCCTGGTTGCATCGCGCATTCTGAATTATCTCCTGCCGTTTGTCATAACAATGTTTTGCGGTCGCCTGGGAAACAGTGTGCTGGCTGGTTATGGAATGGCCTCAGCTGTGAGTTTGTTTCAGTCTGCTTATTGTTCCTCTGGAGTGCTACACACTGTTTGCTTTGTGACGATAAACATAACAACTGCAGCTACAGGTGGAGGTCTTGCGCTGGCGGCTGACACCCTTATCTCTCAGACCTTTGGTGGGAAGAATCTGCAGCGTGTTGGCATCATCTTGCAGAGAAGTGTCCTGATCCTCCTGCTCTTCTGTTTGCCATGTTGGGCTCTGCTCATCAACACCCAACCCATCCTTCTGCTGCTGGGTCAAGACCCAGAGGTGGCCAGGATAGCTCAACTCTATGTGGTCTGTTACCTGCCAGCAGTCCCAGCTATGTTTTTGCATCAGCTGCAAGTAGCCTATCTCCAGAACCAGGGTGTGATTCTGCCTCAGATGTATGCAGCCATTGCAGCCAACGTTGCAAATGTGGTGACAAACTACATCCTTATCAACTGGTTGGACCTTGGGTTATATGGATCTGCTGCTGCCAATACCATATCTCAGATCTATATTTGTGTTTTCCTATTTTTATATATTTGCTGGAAGAAGCTCCACGTTCAAACATGGGGAGGCTGGTCATGTGACTCACTGCAGGAGTGGGATGGATATATGAAATTGGCCATCCCCAGTACAATGATGCTCTGCTTCGAGTGGTGGATTTATGAGGTTGGAGGGTTCCTAGCAGGCATGCTGGGAGAGTTGGATCTTGCAGCTCAACATGCAGTCATTATGTTGGCTTTTATCAACTACATGGGTCTTGTGCTAGCATCAACAAAAACCGTCATTGGTTTCTTATTTACATCAGATGGGCATATTGTGGCGCTCGTCTCCAAACTCTTGAACGTCTACTGTGTGCTTCAGTTCTTTGATGGTCTTGTTTCCAGTTTTTTCATTGCAGTCATTTTTAGACTCAACTGGGAAAGAGTGACCAAAGAGAATGGGGATGAGTACATTACTGTGAGCTCAAATGATCAGGATGAGGGGCCAAACGTGACTCATGTGGAGCAAAAGCCCGTAGCTCTGCTCTCTACCGCTCAGCTGATCCTCAGGAGGGGTCTGACCACCTTCGCTGCTCTTCTCATCCTAGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322515 lncRNA upstream 1267 1333476 ~ 1333715 (+) True G284550
TU322426 lncRNA upstream 265824 1068520 ~ 1069158 (+) True G284464
TU322243 lncRNA upstream 460586 866910 ~ 867085 (+) False G284306
TU322244 lncRNA upstream 460586 866910 ~ 867085 (+) True G284306
TU322279 lncRNA upstream 479105 855530 ~ 855877 (+) True G284338
TU322524 lncRNA downstream 33485 1381743 ~ 1442788 (+) True G284559
TU322663 lncRNA downstream 238893 1587151 ~ 1590509 (+) True G284696
TU322660 lncRNA downstream 308594 1656852 ~ 1696292 (+) True G284694
TU322826 lncRNA downstream 483410 1831668 ~ 1831971 (+) True G284851
TU322834 lncRNA downstream 532332 1880590 ~ 1880807 (+) True G284859
CI01000072_01272628_01318779.mRNA mRNA upstream 15903 1272530 ~ 1319079 (+) True CI01000072_01272628_01318779
CI01000072_01238939_01264489.mRNA mRNA upstream 69517 1238429 ~ 1265465 (+) True CI01000072_01238939_01264489
CI01000072_01183833_01210925.mRNA mRNA upstream 122770 1183539 ~ 1212212 (+) True CI01000072_01183833_01210925
CI01000072_01163522_01163779.mRNA mRNA upstream 171023 1163008 ~ 1163959 (+) True CI01000072_01163522_01163779
CI01000072_01145519_01157117.mRNA mRNA upstream 177107 1145519 ~ 1157875 (+) True CI01000072_01145519_01157117
CI01000072_01351729_01362820.mRNA mRNA downstream 2214 1350472 ~ 1363039 (+) True CI01000072_01351729_01362820
CI01000072_01391395_01404483.mRNA mRNA downstream 41268 1389526 ~ 1406073 (+) True CI01000072_01391395_01404483
CI01000072_01406735_01412673.mRNA mRNA downstream 58477 1406735 ~ 1413120 (+) True CI01000072_01406735_01412673
CI01000072_01413987_01424254.mRNA mRNA downstream 65729 1413987 ~ 1424254 (+) True CI01000072_01413987_01424254
CI01000072_01724644_01730223.mRNA mRNA downstream 376194 1724452 ~ 1731160 (+) True CI01000072_01724644_01730223
TU321805 other upstream 983694 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 633272 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 2621999 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 2820846 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 2820846 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 2876580 4232318 ~ 4232421 (+) False G286474

Expression Profile