CI01000072_00847890_00857227


Basic Information

Item Value
gene id CI01000072_00847890_00857227
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 847199 ~ 857899 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_00847890_00857227.mRNA
GTATATATAAATGAGATAACTATATGCAGTGTATACAGCTTGTTAGTATTCATGACATCAAACATCATGAAATATTAATATGGCAATTCTGGCTGTTCAGTTACAGAGGGCTAGATAAATTGCCTCTCCGTCATTGGACTAATGCAGCACTGATCAGTGGGATAAACCATCTAACCACAGATGGTTTGGTTTTGCCTTTGACACAAAGTATGGCCTACAAATATATTTAGTCCTGAACATTTCTTGAACAGGCCTTTTTTCAACACACAAAGAAATACTGAATGTCCAATTAAGGAAAAGTGACTATGTCTGATTAAGCTGTGGTTGGATCAAGTCTGATGCATTTCTAATCACTCATTTTGGTTGGTTGTGGTATTTTATGTAATTGAAAACATTTGAAAATGGTCTGGTCACATTCCTTTTTGATCTTATTAAGTTATCAAAAGTTATAATGCAAGAACTGTTACAAAAGATTTTTTTAGCCTAAATGGTCAAGATTAATTTACATGACAGATGTGCTCTAGCTAACTTTACCATTCTAAACTGATCATTTATAAATGTATTAATTTTGCCTCAAATCAACTTTTTTTTTGCTTTTTCATCAAAACATGTTGTACTCTTACACAAGTAGAGTTATTTGTGACATTTTAACCTGAGAGGTAAAAGAAAATAGTCTGGAAATGACCAAAAAATGGCCTACTTTGGGCCATATACTCTAACTCTGGTCATACAGTCACATGGTGGCATTTCATCATCAAAAACAGACCGTTTATACACAGGCTTTGGTGTAGAACAAAACATCGACCAGAGGCTGTCATCGAGTAAAGGATCTGAGCTAGCGAGTAGACGAGTACAGGTCAGGCACACAAATCCCTCTTTAACTTCATCTATTGTAGTGGGATTTTGGAGACGCCTGTTGCCTGAGCCGCTCTGCTTATCTACTCATTACGGCTCAACAGCTAAACTATGTTCTGGGCGCGCTCAGACCATTAGTGGTCGGTGCCAAAAAGAGCACAACATTTCTGGGTCGTTGAAAGAGAATGAAGGAAAGGAGGTGGAGAAAGTGGAGCATAGTTCTGCTTCCGAGTCAAGCTTTGTCTATAAATACTCGTACATTGCAGTTCTATGACTATAAATAGGCTTAAATCAACACAATAGGTGGTATTGTACTCCACAGGAAACACTGGAAACGATAAAGGATTCCAATTTAGACCTCTGGTCTTTCTACCATTGTGTAGTCTATTTATTATTATTATTATTATTATTATTATTATTATTAGATTATAAGTCAGTCACGGTGTACATTTTCACCTGGCGCTAAATAGACGTAGCGAACATAAATCGCGTTCGCTCTTAAGGTAACCATAGCAACAGTACTTTTTGTAAGGGTCATCAGAGAGAATATTAACAAACGTTATAACACTGTCATTATTTAATTTCGTTATGGAATTATCACAAATATATCACTCACACACACACACACACACACACACACACACACACACACACACAAAAAAAACGTTTGTGTTTTGTCTACAAAGATAGCAAACTAAAAGTCAAAAAGACAGCTCGGGTTTCGATGACGTTCTAAAATTTCCAGATAGTTGTAATTCGCACACATTTATTATTACCTATTCTTATTATTATTATTACTATTATTACAGAGTAGATTATAGAGAATTGTGTTGTTGTTGCCATTTTCTGCTATTTCTATTAATATTTGTTATTTATTTTAGGCCTGTATGTGTTGTATTTGTGTTTTTACAATATAGTGGCCAACCCTTTTTCATATAAAATAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_00847890_00857227.mRNA True 1801 mRNA 0.35 3 847199 857899

Neighbor

gene id symbol gene type direction distance location
CI01000072_00760940_00797319 BRIP1 coding upstream 49880 760940 ~ 797319 (+)
CI01000072_00629638_00638277 LHX1, LHX1A, LHX1.L coding upstream 207848 629638 ~ 639351 (+)
CI01000072_00603805_00621584 NA coding upstream 225366 602642 ~ 621833 (+)
CI01000072_00453946_00487772 NA coding upstream 358565 453741 ~ 488634 (+)
CI01000072_00441183_00448301 NA coding upstream 398727 440626 ~ 448472 (+)
CI01000072_00873737_00876816 NA coding downstream 15838 873737 ~ 876902 (+)
CI01000072_01119954_01120757 NA coding downstream 261404 1119303 ~ 1120844 (+)
CI01000072_01145519_01157117 NA coding downstream 287620 1145519 ~ 1157875 (+)
CI01000072_01163522_01163779 NA coding downstream 305109 1163008 ~ 1163959 (+)
CI01000072_01183833_01210925 KIAA0753 coding downstream 325640 1183539 ~ 1212212 (+)
G284296 NA non-coding upstream 101227 745722 ~ 745972 (+)
G284121 NA non-coding upstream 179188 667773 ~ 668011 (+)
G284117 NA non-coding upstream 184324 662593 ~ 662875 (+)
G284111 NA non-coding upstream 201140 645671 ~ 646059 (+)
G283927 NA non-coding upstream 205139 640429 ~ 642060 (+)
G284464 NA non-coding downstream 210621 1068520 ~ 1069158 (+)
G284550 NA non-coding downstream 475577 1333476 ~ 1333715 (+)
G284559 NA non-coding downstream 523844 1381743 ~ 1442788 (+)
G284696 NA non-coding downstream 729252 1587151 ~ 1590509 (+)
CI01000072_00338411_00351144 NA other upstream 495911 337071 ~ 351288 (+)
G284742 NA other downstream 1123631 1981530 ~ 1985140 (+)
G285428 NA other downstream 3112358 3970257 ~ 3976214 (+)
G286470 NA other downstream 3311205 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 3366939 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 3480820 4338719 ~ 4343266 (+)

Expression


Co-expression Network