RNA id: CI01000072_00629638_00638277.mRNA


Basic Information

Item Value
RNA id CI01000072_00629638_00638277.mRNA
length 2898
RNA type mRNA
GC content 0.46
exon number 9
gene id CI01000072_00629638_00638277
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 629638 ~ 639351 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGAAATATCCAGTGGATCTGCATGCCTTCCAAACAGCCTTTTGCTGCCATAGCGTGGACCAGCCCCACTGTGCCGTTTTACATGAGAAATGGCCCATATGCACAAAGTTGCGTGGTATTGGTTCCAGATTCCAGACTGGAACGTTTGCACGATATACGCTGAGAGAATCTGGAATGGAAGAGTCTGTATATGGTGGTGAATGGTGTCAGTGTCACACAAAAAGTCAAAGATACCAGAGGTTCGAAATAAGATTAGGATTCGGAACGTGTGCTTTAATGATCTTGAATTATTACATTGATACAAATATTTGCTGTGGAAATTTCAGGAACATGCAGAACACCGGAGGCTGTTCGGGGATCGTCATCAGTCCTGCAACGAGATGTCACGCGCATTCTGTTCACACTAGCATCTTTCACCTCTTCTGTCTTACCGAGGAAACAGCACACGTTATACAGAGGGAGACGCACTTTTCAAAAGCGTTTGGTCATTGCATCTTTCAGAGGGACGTAAACAGTGGATACGTGGACATGGTAAAAGAGAAAACAGGAGCAGACTCTCAGGTTGTGGACACCACGGCAGTAACTGTGGGAGCACATCCAAAGACGATGGTCCACTGTGCGGGCTGCGAGAGGCCTATATTGGACAGGTTTCTCCTTAATGTTCTGGACAGAGCATGGCACATCAAGTGCGTACAATGCTGCGAGTGCAAATGTAACCTTACAGAGAAATGCTTCTCTCGAGAAGGAAAACTCTATTGCAAAAACGACTTCTTTAGGCGCTTTGGAACAAAATGCGCGGGTTGTGCTCAGGGGATCTCGCCGAATGACTTGGTCCGGAGGGCACGGAGCAAAGTGTTTCATCTCAACTGCTTCACATGCATGATGTGTAACAAGCAGCTATCCACGGGGGAGGAATTGTATATCATAGACGAAAATAAATTTGTCTGTAAAGACGATTATTTAAGCAACACGAACGGAAAAGACACTAATCTCCTTTCAGTCACAGCTTGCAGTGATCCTAGTTTATCGCCAGATTCGCAAGACCAGCTACAGGACGATGTCAAGGATGCGGAAATCGCAAACTTATCGGACAAAGAAACGGGTAACAATGAAAACGATGACCAGAACCTCGGAGGCAAACGGAGAGGACCGCGTACCACGATTAAAGCAAAGCAATTGGAGACACTGAAAGCGGCATTCGCGGCGACCCCCAAACCAACAAGACACATCAGGGAGCAACTGGCGCAGGAGACGGGGCTCAACATGCGAGTTATTCAGGTATGGTTTCAGAACCGGCGGTCCAAAGAGCGTAGAATGAAACAGCTGAGCGCGCTTGGCGCGAGGAGACACGCGTTCTTCCGGAGTCCGAGAAGAATGCGAACGCTCGTGGACAGACTCGAGCCTGGAGAATTAATTCCAAACGGCCCGTTTTCGTACTATGGAGATTATCAGAGCGAGTACTACGGTCCGGGAGGGAATTACGACTTCTTTCCCCAAGGCCCGCCATCTTCGCAGGCCCAGACTCCTGTAGACCTCCCCTTTGTTCCATCGTCAGGACCCACCGGTACCCCGCTAGGGGGCATGGACCATCCTATCCCCGGCCATCATCCGTCCAGTGAAGTACAGCGCTTTTCAGATATCATGTCTCACCACCCAGGGGACTCGCCCAGTCCAGAGCCAGGGATACCCGGGCCCCTGCACAGTATGTCCTCAGATGTTTTTGGACCCAGTCCGTCCTTTACATCCCTCTCCCTCAACGGCAGCGGATACAGCAACCACCTCTCCCACCCTCCATCAGAAATGAATGAGGGCACGGTCTGGTAGCTTTTGTGAACGGACATTTCTGCAGGGAGAAATTATGATAAACAGAGGAGGGAGGGAGGGAACAGGGACACTGGCCGCACATTCTGGTTATCATTTTTGTCTTTTCCCCCCTTTTTTCCCATGTCATAAATGTGGTGGGACAGCTCACAGAGAGAGCAGCAGAGGGCAGCATGGGCATTGACATTTACCTTCATGAACTCATTGTGTTGATGTTCCGTTTCCTTCTGTCTTTCTTTCTTTATCCCAAGTCCGAACTCAAGAAGAGAAAGAATTGATACTGTTGACCCGTTCGCTGTATGAACTCCACTACGAGGCGTCCCTCCAGAAGCTCAATACGTACAACCGGTTAAATCGGCGCTCTAAAACAGCGATAGCAACACATTAACAGCGTCAGCTACCGTCGAAGACTTGTCAGCTTTACAGAGAAACACCCAAGGCGGCTGATCTAACGCTAACCTGCAATGTTGACTCCAGGAAAGATCTAAGCCGTCAGACTAATTTATTTATTTGAAAACTCCTCAGACCTCCTTGCCTTTCAAGGCTCTGCCATACTGACACTTAAACAACCTTTTCGACACTAAATATGTTTCTGAAGGCCAGGGAGAAAAAGCTTTTTTTCTCTTTCTGGGCATATCCTGTTTTTTTTTTCTCTCCCCAAGAATTCCACCAAATCTGAAGAAGTTAGCCTTCAAAAGGCAAAATGTTAAAATGTGTATGGATGGTGAACCCTTTATTTAATGGAAGAGAACTTGAAATGTTGATAAATGAAGTCTACCTTCTAAAATTATTTTAACAAGGGTCTGAAAGGGACATAGAACAGTCAACTGTTTACGTAATATATTTAATTCAGGAGTTAAAAGTATCAACCATGATTTAGAACCTCTTGATCCAGAAAAAAATGTTCCAAGCAACCAACCAAACTTTTGTATTGATTTTATTTATATTGTATGATGAAAGTTTGCTGGGGTTGTGGTTCACTGTGCTAGTTTGTACAAAATGTTGTTTACAAAAAAAAAAAAAACTGGAAAAAAAAAACAAACAAAGAAAAAAAAAAAACAAGTAGACAGTTGCCAA

Function

GO:

id name namespace
GO:0021517 ventral spinal cord development biological_process

KEGG:

id description
K09372 LHX1; LIM homeobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321834 lncRNA upstream 249480 379916 ~ 380158 (+) True G283951
TU321804 lncRNA upstream 329312 298283 ~ 300326 (+) True G283925
TU321777 lncRNA upstream 354145 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321774 lncRNA upstream 366807 262612 ~ 262831 (+) True G283903
TU321652 lncRNA upstream 385729 240653 ~ 243909 (+) True G283797
TU321806 lncRNA downstream 1078 640429 ~ 642060 (+) True G283927
TU322027 lncRNA downstream 6320 645671 ~ 646059 (+) True G284111
TU322033 lncRNA downstream 23242 662593 ~ 662875 (+) True G284117
TU322037 lncRNA downstream 28422 667773 ~ 668011 (+) True G284121
TU322231 lncRNA downstream 106371 745722 ~ 745972 (+) True G284296
CI01000072_00603805_00621584.mRNA mRNA upstream 7805 602642 ~ 621833 (+) True CI01000072_00603805_00621584
CI01000072_00453946_00487772.mRNA mRNA upstream 141004 453741 ~ 488634 (+) True CI01000072_00453946_00487772
CI01000072_00441183_00448301.mRNA mRNA upstream 181166 440626 ~ 448472 (+) True CI01000072_00441183_00448301
CI01000072_00404877_00406183.mRNA mRNA upstream 222546 404877 ~ 407092 (+) True CI01000072_00404877_00406183
CI01000072_00400359_00403220.mRNA mRNA upstream 226124 399816 ~ 403514 (+) True CI01000072_00400359_00403220
CI01000072_00760940_00797319.mRNA mRNA downstream 121589 760940 ~ 797319 (+) True CI01000072_00760940_00797319
CI01000072_00847890_00857227.mRNA mRNA downstream 207848 847199 ~ 857899 (+) True CI01000072_00847890_00857227
CI01000072_00873737_00876816.mRNA mRNA downstream 234386 873737 ~ 876902 (+) False CI01000072_00873737_00876816
CI01000072_01119954_01120757.mRNA mRNA downstream 479952 1119303 ~ 1120844 (+) True CI01000072_01119954_01120757
CI01000072_01145519_01157117.mRNA mRNA downstream 506168 1145519 ~ 1157875 (+) True CI01000072_01145519_01157117
TU321805 other upstream 278350 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1342179 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3330906 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3529753 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3529753 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 3585487 4232318 ~ 4232421 (+) False G286474

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018241 False 2402 mRNA 0.46 5 NC_007126.7 27703409 ~ 27710513 (-)
eurasian perch (Perca fluviatilis) TU32748 True 727 lncRNA 0.41 1 NC_053113.1 46710955 ~ 46711681 (+)
bowfin (Amia calva) AMCG00005544 True 1221 mRNA 0.60 5 CM030142.1 4479446 ~ 4490819 (+)
tiger barb (Puntius tetrazona) TU32748 True 319 lncRNA 0.37 2 NC_056701.1 21141065 ~ 21213616 (+)