RNA id: TU321652


Basic Information

Item Value
RNA id TU321652
length 636
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G283797
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 240653 ~ 243909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATTTGCATCAGAAATACTTTTATTTCAAATTATACTCCACAAGAGTAATTTAGAATTACAACTTGATATCAAACTGAACTTTGCGAAAGCAAAACACACACACACCCAAACAACAAAATACCTCGAACACACTGTCATGGCTATCAATCATCAAAGACCATTAAAGGTTTTCAGATGTTTTTGTGTTTTCTTCCCCCTAACTTCAGTAAGTTTGGCATTGATGGTTGCACCAATGCTGGCGGGCACAATATGAAGACACTTTGTGCAACGTTGCTCTTTTTTGTTGTCATTTCTCAATTTTTCATTTTCCTCCATTTTTTTCAGCCTCTTCTGAGTCTCTGTCAAGGGCTTGTGCTTGATACTCATCAACAGTCTTTCGGGCAACATTTCTCTGTGGTTTGGGAATCACTGTCCTTTTCCTTTGGGTAGTGCTTCAGCACTCTGGGATCCGCTCCGTCTCTCTCTTCTCTCTCTCTCTGACGACATCACTTCAGGCTGATGCATCGACTTCAAAGGCTCCACTTTCAGCGCACTCAATCACATTTCCAGTTAGATGAATGGATTTTCAGGAGAAACGGTCTGTGCTGATCTGCTCTGACTCTCTCTCATATGCTCACGCTGAAAGCAGCGCCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321648 lncRNA upstream 18615 221802 ~ 222038 (+) True G283793
TU321645 lncRNA upstream 25420 209265 ~ 215233 (+) True G283790
TU321624 lncRNA upstream 97934 142489 ~ 142719 (+) True G283777
TU321622 lncRNA upstream 101075 139092 ~ 139578 (+) True G283776
TU321618 lncRNA upstream 105430 135024 ~ 135223 (+) True G283772
TU321774 lncRNA downstream 18703 262612 ~ 262831 (+) True G283903
TU321777 lncRNA downstream 31103 275012 ~ 275493 (+) True CI01000072_00275132_00275592
TU321804 lncRNA downstream 54374 298283 ~ 300326 (+) True G283925
TU321834 lncRNA downstream 136007 379916 ~ 380158 (+) True G283951
TU321806 lncRNA downstream 396520 640429 ~ 642060 (+) True G283927
CI01000072_00196391_00200157.mRNA mRNA upstream 40148 196391 ~ 200505 (+) True CI01000072_00196391_00200157
CI01000072_00146339_00152728.mRNA mRNA upstream 87267 146339 ~ 153386 (+) True CI01000072_00146339_00152728
CI01000072_00127835_00129847.mRNA mRNA upstream 110646 127755 ~ 130007 (+) True CI01000072_00127835_00129847
CI01000072_00114969_00116445.mRNA mRNA upstream 123966 114931 ~ 116687 (+) True CI01000072_00114969_00116445
CI01000072_00079524_00085764.mRNA mRNA upstream 154177 78303 ~ 86476 (+) True CI01000072_00079524_00085764
CI01000072_00245767_00246460.mRNA mRNA downstream 535 244444 ~ 246681 (+) True CI01000072_00245767_00246460
CI01000072_00275132_00275592.mRNA mRNA downstream 30071 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00295802_00308710.mRNA mRNA downstream 51292 295201 ~ 309557 (+) True CI01000072_00295802_00308710
CI01000072_00315525_00322937.mRNA mRNA downstream 69148 313057 ~ 323069 (+) True CI01000072_00315525_00322937
CI01000072_00338411_00351144.mRNA mRNA downstream 93162 337071 ~ 351276 (+) False CI01000072_00338411_00351144
TU321805 other downstream 105215 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1737621 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3726348 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 3925195 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 3925195 4169104 ~ 4175651 (+) True G286470

Expression Profile