RNA id: TU321622


Basic Information

Item Value
RNA id TU321622
length 303
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G283776
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 139092 ~ 139578 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGGAGCAGATACTGGTCCTGCTGATGGGTTAAGGACCTTCTACGGCCCTGTCCAGCTCTCCTAGAGTAACTGCCTGTCTCCTGGAATCTCCTCCATGCTCTTGAGACTGTGCTGGGAGACACAGCAAACCTTCTGGCAATGGCACGTATTGATGTGCCATCCTGGAGGAGTTGGACTGCCTGTGCAACCTCTGTAGGGTCCAGGTATCGCCTCATGCTACCAGTAGTGACACTGACCCTAGCCAAATGCAAAACTACTGAAAAACAGTCAGAAAAGATGAGTAGGGAAAAAAATGTCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321618 lncRNA upstream 3869 135024 ~ 135223 (+) True G283772
TU321605 lncRNA upstream 41662 97223 ~ 97430 (+) True G283760
TU321557 lncRNA upstream 118495 20382 ~ 20597 (+) True G283715
TU321624 lncRNA downstream 2911 142489 ~ 142719 (+) True G283777
TU321645 lncRNA downstream 69687 209265 ~ 215233 (+) True G283790
TU321648 lncRNA downstream 82224 221802 ~ 222038 (+) True G283793
TU321652 lncRNA downstream 101075 240653 ~ 243909 (+) True G283797
TU321774 lncRNA downstream 123034 262612 ~ 262831 (+) True G283903
CI01000072_00127835_00129847.mRNA mRNA upstream 9085 127755 ~ 130007 (+) True CI01000072_00127835_00129847
CI01000072_00114969_00116445.mRNA mRNA upstream 22405 114931 ~ 116687 (+) True CI01000072_00114969_00116445
CI01000072_00079524_00085764.mRNA mRNA upstream 52616 78303 ~ 86476 (+) True CI01000072_00079524_00085764
CI01000072_00055224_00076836.mRNA mRNA upstream 61737 55178 ~ 77355 (+) True CI01000072_00055224_00076836
CI01000072_00146339_00152728.mRNA mRNA downstream 6761 146339 ~ 153386 (+) True CI01000072_00146339_00152728
CI01000072_00196391_00200157.mRNA mRNA downstream 56813 196391 ~ 200505 (+) True CI01000072_00196391_00200157
CI01000072_00245767_00246460.mRNA mRNA downstream 104866 244444 ~ 246681 (+) True CI01000072_00245767_00246460
CI01000072_00275132_00275592.mRNA mRNA downstream 134402 273980 ~ 277268 (+) False CI01000072_00275132_00275592
CI01000072_00295802_00308710.mRNA mRNA downstream 155623 295201 ~ 309557 (+) True CI01000072_00295802_00308710
TU321805 other downstream 209546 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 1841952 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 3830679 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 4029526 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 4029526 4169104 ~ 4175651 (+) True G286470

Expression Profile