CI01000072_01334982_01348258


Basic Information

Item Value
gene id CI01000072_01334982_01348258
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1334982 ~ 1348258 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_01334982_01348258.mRNA
ATGGATGTTTCAAGTCCCAGGACTGAAGCTTCATCAATGGAGCCTAGTTCCAAGCTTTTTTGCTGTAGATTCGTGAGACGTTGCATCCCTCTGATCTACAGACAGGAGCTCTACCACATCCTGCGAATGACCGGACCCCTGGTTGCATCGCGCATTCTGAATTATCTCCTGCCGTTTGTCATAACAATGTTTTGCGGTCGCCTGGGAAACAGTGTGCTGGCTGGTTATGGAATGGCCTCAGCTGTGAGTTTGTTTCAGTCTGCTTATTGTTCCTCTGGAGTGCTACACACTGTTTGCTTTGTGACGATAAACATAACAACTGCAGCTACAGGTGGAGGTCTTGCGCTGGCGGCTGACACCCTTATCTCTCAGACCTTTGGTGGGAAGAATCTGCAGCGTGTTGGCATCATCTTGCAGAGAAGTGTCCTGATCCTCCTGCTCTTCTGTTTGCCATGTTGGGCTCTGCTCATCAACACCCAACCCATCCTTCTGCTGCTGGGTCAAGACCCAGAGGTGGCCAGGATAGCTCAACTCTATGTGGTCTGTTACCTGCCAGCAGTCCCAGCTATGTTTTTGCATCAGCTGCAAGTAGCCTATCTCCAGAACCAGGGTGTGATTCTGCCTCAGATGTATGCAGCCATTGCAGCCAACGTTGCAAATGTGGTGACAAACTACATCCTTATCAACTGGTTGGACCTTGGGTTATATGGATCTGCTGCTGCCAATACCATATCTCAGATCTATATTTGTGTTTTCCTATTTTTATATATTTGCTGGAAGAAGCTCCACGTTCAAACATGGGGAGGCTGGTCATGTGACTCACTGCAGGAGTGGGATGGATATATGAAATTGGCCATCCCCAGTACAATGATGCTCTGCTTCGAGTGGTGGATTTATGAGGTTGGAGGGTTCCTAGCAGGCATGCTGGGAGAGTTGGATCTTGCAGCTCAACATGCAGTCATTATGTTGGCTTTTATCAACTACATGGGTCTTGTGCTAGCATCAACAAAAACCGTCATTGGTTTCTTATTTACATCAGATGGGCATATTGTGGCGCTCGTCTCCAAACTCTTGAACGTCTACTGTGTGCTTCAGTTCTTTGATGGTCTTGTTTCCAGTTTTTTCATTGCAGTCATTTTTAGACTCAACTGGGAAAGAGTGACCAAAGAGAATGGGGATGAGTACATTACTGTGAGCTCAAATGATCAGGATGAGGGGCCAAACGTGACTCATGTGGAGCAAAAGCCCGTAGCTCTGCTCTCTACCGCTCAGCTGATCCTCAGGAGGGGTCTGACCACCTTCGCTGCTCTTCTCATCCTAGCT

Function

NR:

description
multidrug and toxin extrusion protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_01334982_01348258.mRNA True 1323 mRNA 0.48 14 1334982 1348258

Neighbor

gene id symbol gene type direction distance location
CI01000072_01272628_01318779 PITPNM3 coding upstream 15903 1272530 ~ 1319079 (+)
CI01000072_01238939_01264489 NA coding upstream 69517 1238429 ~ 1265465 (+)
CI01000072_01183833_01210925 KIAA0753 coding upstream 122770 1183539 ~ 1212212 (+)
CI01000072_01163522_01163779 NA coding upstream 171023 1163008 ~ 1163959 (+)
CI01000072_01145519_01157117 NA coding upstream 177107 1145519 ~ 1157875 (+)
CI01000072_01351729_01362820 NA coding downstream 2214 1350472 ~ 1363039 (+)
CI01000072_01391395_01404483 WDR81 coding downstream 41268 1389526 ~ 1406073 (+)
CI01000072_01406735_01412673 SERPINF2B coding downstream 58477 1406735 ~ 1413120 (+)
CI01000072_01413987_01424254 RPA1 coding downstream 65729 1413987 ~ 1424254 (+)
CI01000072_01724644_01730223 NA coding downstream 376194 1724452 ~ 1731160 (+)
G284550 NA non-coding upstream 1267 1333476 ~ 1333715 (+)
G284464 NA non-coding upstream 265824 1068520 ~ 1069158 (+)
CI01000072_00873737_00876816 NA non-coding upstream 460586 873737 ~ 876902 (+)
G284338 NA non-coding upstream 479105 855530 ~ 855877 (+)
G284296 NA non-coding upstream 589010 745722 ~ 745972 (+)
G284559 NA non-coding downstream 33485 1381743 ~ 1442788 (+)
G284696 NA non-coding downstream 238893 1587151 ~ 1590509 (+)
G284694 NA non-coding downstream 308594 1656852 ~ 1696292 (+)
G284851 NA non-coding downstream 483410 1831668 ~ 1831971 (+)
G284859 NA non-coding downstream 532332 1880590 ~ 1880807 (+)
CI01000072_00338411_00351144 NA other upstream 983694 337071 ~ 351288 (+)
G284742 NA other downstream 633272 1981530 ~ 1985140 (+)
G285428 NA other downstream 2621999 3970257 ~ 3976214 (+)
G286470 NA other downstream 2820846 4169104 ~ 4175651 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 other downstream 2876580 4224789 ~ 4268148 (+)
CI01000072_04338747_04342064 SDHD other downstream 2990461 4338719 ~ 4343266 (+)

Expression


Co-expression Network