CI01000072_03972493_03983836 (SPA17)


Basic Information

Item Value
gene id CI01000072_03972493_03983836
gene name SPA17
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3972401 ~ 3983836 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000072_03972493_03983836.mRNA
ACAGCCAGAGTGATCATGAAGTCCCTTATGCTGACATTGTGATCTCCGTGAGGGGATCCAGCAATCCAGATATATCTGACACCTTTAACCAGACTTCAAAAAACCAAAGACCAAGATGGAGGGATGAGACCAGAGCAGGGCTACTACATGCTTCAGCTGACAGACTGCACATCCACTCTAAAGAGGTTCTGTATAAGATGTCTGTTCCCTTCTCCAACACAAACCTGCGGATCCCTAAAGGCTTTGGGAATTTATTGGAAGGTCTTGCCAGGGAAGTTTTGAGAGACCAGCCTGAGGACATCCCTACCTTTGCTGCTCTCTACTTCACAGGGCTTCTTAAAGCTAGAGAAGAAAGTGGCCTAGACCCAGCAGAGTGGGGTGCAAAGTTGGAAGACAGGTTCTACAATAATCACTCGTTTAAGTGCAGCAGGTTTAAAACATTACAGCAGGATGAACCTCGAAACTACGCTGGCCGTTCTGAAACTTTTGGAAACAATGAAACCCAACATTCTGCATTAAAAGACCTCAACACTAATAATAATTCAGAGGACACTGAAAAATATGATTTAGAAAAGAAGCTCGATGAGGAATCCAGTGAGAGGGAACATGCACCTGCTGCAGATATTCCCTATGTGGGAACAGCAGATGTTGATATATGTGCTCAAGAGCTGAAAGACCCTAGCGGGGTTCCAAAACAAACATCAGAGGTACTGAAAGATCAAGAGGTTGCAAAGGAAGCTACAGATATTGATATCTGCAGATCCGAACTTGAGCCTACACCTCTGCCCTCCTTTGGTGGTCTTGCAAATGTGGATGTATGTGCTGAAGAGATAAACCACCCATCTGAATCTACTGAGAACAACAGAGACTTGGAAAGCCCAAAACTGTTGCCTCCAAATGAAGAACAGTCTGAATCACATGATGAATCTTTTGTTGAAACCCCTTCACATATTGAGCAGGATGCTGGCAAACCAGCAGATGAAATTGCAGTTGAAACAGGGCAGGAATCAGAGGAACATATTGAAGAAAACAATGACTTACCAGACATTGAAGATCAAGAAGAGACCAATCATGAGTACAGTAGCACCAATGACTTTGTAGAAGATGTAGCTGATTCCACATCTGATATCAATAGTAAATCACTGATGGAAATGAAAGACGCGCATATTGACTACAGTGATGAAACATATGACAGTAAAAGCGAAGTCGTAGATGTTCTAGATGAAGTTGACCATCAGTGTCTTACTCATACAGATGAGCATGAAGCTGAGAACAGCACTGATGAACAGAGTACATCTAAAAATATGGATGCAATTATGGAGGAAGACCTTTTAGAAACCCCAAAGCCAGTTTCCCAACTAATCATCAGTGAAAATGAGGTAACAGAGGATATGATAAGCAATGACATTTTAAATACTGATGTAACGGAAGCTTCTGAGCAAGATCTAAACACAGAGAATGTAAATGAAGGAAGTGATCTTGACAGTGATGCTGAAGAGATGGATCCAGACATTTCAAACATGCCTCAGCAAAATATGGTAAAAACTGAGGATGAGGAGGATGATGGAACTCATGATACTGAACCAAAGGAAGCTGAAGAAGCTGAGCCCAGGCCTCTAGAGAGAGAAACGGAGGTTATCAGTGAAGAACATCCTACAGAGTCACAAGAACAGACTGAGAATGATGCAGATCAGGAGGATCAGTTGGAGGAGCAAAGAGATAAAAGCCAGGAATCGATACTTGAAAGTGAGAACCAGGAGAATCCTGACAGCAGTGAACCAAAGTTAATAAGTAAAAATAAAATCTTCAAGGACATGTCTGATCAACAGCATGGCTCTGTTCCTCTCTGGAGAACAGTGATTGAAGATGTCCCTGAAATAGTCCAGCTGGAGGAATGCAACCAACCACAAGAGGAAGAGGACATCATGGACATCCCATTGGATGACCCAGAGGCCAATAAGGCAGCCGCCAAAATCCAGGCCGGCTTCCGTGGTCATATGACCCGGAAGAAGATGAAACCCGGTGAAAAGCCTAATGAGGAGGTGAGCAGCAGTGTCAGAGTGAACACAAGAACTAGACTCAACACCATCCCACATGGTGCAGAGGTTGCCAGCTCTCTTGATCCAGCTCAGCTTGGCAAAACCCTCACAGATTCTTGCAGAATTTGGAACTGTGCCGCTCTACCCCACCTCTGTGCCGAATTTAGGCCTTTTCCAAGCAACATCAACCCAGTTCTCAGTTGCTAAGCATCTTATGTATGGAAGTGTTATTTTTATCCTCAGGTGCATCTGCATCGCCGAAACGAGGCTGTGCTCTGTTTTACTTGGACAAAAATAAA

Function

symbol description
spa17 Predicted to enable calmodulin binding activity. Acts upstream of or within cilium movement. Located in motile cilium. Orthologous to human SPA17 (sperm autoantigenic protein 17).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000072_03972493_03983836.mRNA False 2338 mRNA 0.44 11 3972401 3983836

Neighbor

gene id symbol gene type direction distance location
CI01000072_03959944_03964339 NA coding downstream 7785 3959919 ~ 3964616 (-)
CI01000072_03941680_03952617 PDE9A, PDE9AL coding downstream 19784 3941331 ~ 3952617 (-)
CI01000072_03908090_03922942 NA coding downstream 49459 3907387 ~ 3922942 (-)
CI01000072_03898250_03900844 TMEM136A, TMEM136 coding downstream 71557 3898165 ~ 3900844 (-)
CI01000072_03844170_03870555 ARHGEF12A coding downstream 101846 3843492 ~ 3870555 (-)
CI01000072_04125176_04131163 ANKK1 coding upstream 139722 4123558 ~ 4131448 (-)
CI01000072_04150260_04155131 NA coding upstream 166394 4150230 ~ 4157566 (-)
CI01000072_04156907_04167270 NA coding upstream 173071 4156907 ~ 4167270 (-)
CI01000072_04191370_04195085 NA coding upstream 207534 4191370 ~ 4195085 (-)
CI01000072_04197826_04201434 NA coding upstream 213990 4197826 ~ 4201434 (-)
G286256 NA non-coding downstream 130339 3841670 ~ 3842062 (-)
G286236 NA non-coding downstream 470186 3501101 ~ 3502215 (-)
G286249 NA non-coding downstream 499350 3393763 ~ 3473051 (-)
G286219 NA non-coding downstream 536202 3410662 ~ 3436199 (-)
G286290 NA non-coding downstream 581023 3391163 ~ 3391378 (-)
G286867 NA non-coding upstream 69215 4053051 ~ 4065995 (-)
G286873 NA non-coding upstream 83100 4066936 ~ 4067174 (-)
G286874 NA non-coding upstream 83757 4067593 ~ 4067795 (-)
G286877 NA non-coding upstream 97146 4080982 ~ 4081213 (-)
G286880 NA non-coding upstream 109274 4093110 ~ 4093325 (-)
G286005 NA other downstream 972906 2993769 ~ 2999495 (-)
G285752 NA other downstream 1801743 2168048 ~ 2170658 (-)
G285766 NA other downstream 1964092 2005551 ~ 2008309 (-)
CI01000072_01596829_01610605 NA other downstream 2344506 1594111 ~ 1627895 (-)
G285534 NA other downstream 2617469 1335507 ~ 1354932 (-)
G287021 NA other upstream 402309 4386145 ~ 4394223 (-)
G287264 NA other upstream 1396884 5380720 ~ 5382001 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008480 spa17 coding NC_007126.7 CM002899.2 22267847 ~ 22286918 (+)