XLOC_008480 (spa17)


Basic Information

Item Value
gene id XLOC_008480
gene name spa17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22267847 ~ 22286918 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016974
ATGGCTGTTCCCTTCTCCAACACACACCTGCGCATCCCAAGAGGCTTTGGGAATTTATTAGAGGGTCTTACCAGAGAAGTGTTGAGAGAGCAGCCAGAGGACATCGCCACTTTTGCTGCTGTCTACTTCACAGAGCTGCTCAAAGCCAGAGAAGaaAGTGGTCTTGACCCAGCAGAGTGGGGTGCCAAGTTGGAAGACAGGTTCTACAACAATCACTCATTTAAGGGAACATCATTACAAGGAAACATCATTTCACCCAAAATAAACACAAGAATCAACGCAGAATCGAGTTCTGAAACTTTGGGAAACAACGAGACTCAGCTCTCTGCATTAAAAGACCTCGACACTGATAATTCAGTTGGCAGTGAGGTCAATTTAGATAAGAAGTTTGATGAGGAATCTGGTGAGAAGGAACGCGGACATGCTGAAGATATTCTCCCTGCAGAAACAGCAGATGGTGATAAATGTGCTGAAGAGCTAAAAGACACCAATGAGATTCCAGGAGAAACATCAGAAGTTGCAAAAGAAGAAGTAGATGTTGACATCTGCAGATCCGAACTTGAGCCTACACCTCTGCCTTCATTTGGTGGCCATGCAAATGTGGATGTTTGTGCTGAAGAGATAAACCTCCAGTCTGAATCCAGCAAGAGCAAAGAAGAGTTGGTTAGCCCAAAACCATTGTTCCTGAATAAAGACCAATCTGAATCACAAGACGAAATACATTCACACACTGAACAAGATGCAAGCAAACAAGCTAATGAAATGTCTGAtcatggtgatgatgatgatgctgaagATCCTGAAGAGGAAGTGTCAGAAATTGCTGATAATTTATTAGAAGACATTGACCCAGAAGAGAAGAGCACTGAGCAGGTTTATGCAGAAGAATCCACTGAAAGCACCATTGAAAAATACATAACTGAAAGTGTAGCAGGGCAGGAATCAGAAGATGCAATCAATGAAGATCAAGAAGAGACCAATTATGAGTACACAAGCACCAATGACTTTGTTGAAGATGCAGGTGATTCAACTTCTGATATCAATAGCCGATCGCTGATGGAAATGAAAGACACTCACGTTGACTACAGTGATGAAATACACGACAGTAAAAGTGAAGTCGTTGATGTCTTAGATGAAGTTCACCATCAGTGCGACACTCGTACAGGTGAGGAAGAAGCTGAAAACAGCAGTGACGAAGAGAATACTTCTAAAATTCTAGATGCGTTAAATGAGGAAGACTTTTTGGAAACTCCAAAACCTGTTTCCCAAATGAACGACAGTGAAGCTGAAGCAAGCAACGAGATTTTAAATGCTGACGCTTTTGAGAAAGATCTAAACACAGAGAATGTAAATGAAGGAAGTGATCTTGACAGTGATGGCTTTGAGGCTGAAGAGATGGATCTGGACATTTCAAATGTGCTTCAGCCAAATGAGGAAAAAACTGAGGATGAAGGAAATCATGATCCTGAACCAGAGGAAGATGCTTTCTCTGAAGCAGAACAAGCCAATCCTGAGCCTTTAGAGAACGAAACAGTGGTTGTCAATGAAGAACTTTTTGAGTCACAAGAACAGACTGAAAATACTGAGAATGATGTAGATCAAGAGGATCAGTTGGAGGAGCAAAGGGATAAAATCCAAGAAATGACACTTGAAAGTGAAAACCTGGAGAATACTGACATCTCTGAACCAAAGGAGGAATGCAGCCAGCCACAAGAGGAAGAGGATATTATGGACATCCCATTGGATGACCCAGAGGCCAATAAAGCGGCCGCCAAAATTCAGGCCGGCTTCCGTGGTCATATGACCCGGAAGAAGATGAAACCAGGCGAAAAGCCCGGTGAGGAGGTGAGCAGCAGTGGTGAGGCCCTCAACGGCAGCCAAGGGGACTCAGGAGGAACAGACGGAGTAGAGACAGACGGCACATCTGGACCAGAACAGTGA

Function

symbol description
spa17 Predicted to enable calmodulin binding activity. Acts upstream of or within cilium movement. Located in motile cilium. Orthologous to human SPA17 (sperm autoantigenic protein 17).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0031514 motile cilium cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-337 Predicted to enable calmodulin binding activity. Acts upstream of or within cilium movement. Located in motile cilium. Orthologous to human SPA17 (sperm autoantigenic protein 17).

Ensembl:

ensembl_id ENSDARG00000069361

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016974 True 1941 mRNA 0.44 6 22267847 22286918

Neighbor

gene id symbol gene type direction distance location
XLOC_008479 ankk1 coding upstream 242893 22014029 ~ 22024954 (+)
XLOC_008478 BX572077.3 coding upstream 264651 22003082 ~ 22003196 (+)
XLOC_008477 ttc12 coding upstream 286301 21947117 ~ 21981546 (+)
XLOC_008476 si:dkey-103g5.4 coding upstream 324284 21882419 ~ 21943563 (+)
XLOC_008475 si:dkey-103g5.3 coding upstream 395023 21862295 ~ 21872824 (+)
XLOC_008481 hepacama coding downstream 24885 22311803 ~ 22325973 (+)
XLOC_008482 pde9al coding downstream 46860 22333778 ~ 22348626 (+)
XLOC_008483 NA coding downstream 64447 22351365 ~ 22366522 (+)
XLOC_008484 oafa coding downstream 103158 22390076 ~ 22431585 (+)
XLOC_008485 CR848033.1 coding downstream 127206 22414124 ~ 22414253 (+)
XLOC_008463 BX663520.1 misc upstream 1015565 21252191 ~ 21252282 (+)
XLOC_008474 NA non-coding upstream 407430 21780598 ~ 21860417 (+)
XLOC_008472 NA non-coding upstream 547877 21707783 ~ 21719970 (+)
XLOC_008470 NA non-coding upstream 724929 21520410 ~ 21542918 (+)
XLOC_008469 dre-let-7a-2 non-coding upstream 829888 21437876 ~ 21437959 (+)
XLOC_008488 NA non-coding downstream 254426 22541344 ~ 22561137 (+)
XLOC_008490 NA non-coding downstream 920241 23207159 ~ 23207464 (+)
XLOC_008492 NA non-coding downstream 979740 23266658 ~ 23268377 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location