RNA id: TCONS_00016974


Basic Information

Item Value
RNA id TCONS_00016974
length 1941
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_008480
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22267847 ~ 22286918 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGTTCCCTTCTCCAACACACACCTGCGCATCCCAAGAGGCTTTGGGAATTTATTAGAGGGTCTTACCAGAGAAGTGTTGAGAGAGCAGCCAGAGGACATCGCCACTTTTGCTGCTGTCTACTTCACAGAGCTGCTCAAAGCCAGAGAAGaaAGTGGTCTTGACCCAGCAGAGTGGGGTGCCAAGTTGGAAGACAGGTTCTACAACAATCACTCATTTAAGGGAACATCATTACAAGGAAACATCATTTCACCCAAAATAAACACAAGAATCAACGCAGAATCGAGTTCTGAAACTTTGGGAAACAACGAGACTCAGCTCTCTGCATTAAAAGACCTCGACACTGATAATTCAGTTGGCAGTGAGGTCAATTTAGATAAGAAGTTTGATGAGGAATCTGGTGAGAAGGAACGCGGACATGCTGAAGATATTCTCCCTGCAGAAACAGCAGATGGTGATAAATGTGCTGAAGAGCTAAAAGACACCAATGAGATTCCAGGAGAAACATCAGAAGTTGCAAAAGAAGAAGTAGATGTTGACATCTGCAGATCCGAACTTGAGCCTACACCTCTGCCTTCATTTGGTGGCCATGCAAATGTGGATGTTTGTGCTGAAGAGATAAACCTCCAGTCTGAATCCAGCAAGAGCAAAGAAGAGTTGGTTAGCCCAAAACCATTGTTCCTGAATAAAGACCAATCTGAATCACAAGACGAAATACATTCACACACTGAACAAGATGCAAGCAAACAAGCTAATGAAATGTCTGAtcatggtgatgatgatgatgctgaagATCCTGAAGAGGAAGTGTCAGAAATTGCTGATAATTTATTAGAAGACATTGACCCAGAAGAGAAGAGCACTGAGCAGGTTTATGCAGAAGAATCCACTGAAAGCACCATTGAAAAATACATAACTGAAAGTGTAGCAGGGCAGGAATCAGAAGATGCAATCAATGAAGATCAAGAAGAGACCAATTATGAGTACACAAGCACCAATGACTTTGTTGAAGATGCAGGTGATTCAACTTCTGATATCAATAGCCGATCGCTGATGGAAATGAAAGACACTCACGTTGACTACAGTGATGAAATACACGACAGTAAAAGTGAAGTCGTTGATGTCTTAGATGAAGTTCACCATCAGTGCGACACTCGTACAGGTGAGGAAGAAGCTGAAAACAGCAGTGACGAAGAGAATACTTCTAAAATTCTAGATGCGTTAAATGAGGAAGACTTTTTGGAAACTCCAAAACCTGTTTCCCAAATGAACGACAGTGAAGCTGAAGCAAGCAACGAGATTTTAAATGCTGACGCTTTTGAGAAAGATCTAAACACAGAGAATGTAAATGAAGGAAGTGATCTTGACAGTGATGGCTTTGAGGCTGAAGAGATGGATCTGGACATTTCAAATGTGCTTCAGCCAAATGAGGAAAAAACTGAGGATGAAGGAAATCATGATCCTGAACCAGAGGAAGATGCTTTCTCTGAAGCAGAACAAGCCAATCCTGAGCCTTTAGAGAACGAAACAGTGGTTGTCAATGAAGAACTTTTTGAGTCACAAGAACAGACTGAAAATACTGAGAATGATGTAGATCAAGAGGATCAGTTGGAGGAGCAAAGGGATAAAATCCAAGAAATGACACTTGAAAGTGAAAACCTGGAGAATACTGACATCTCTGAACCAAAGGAGGAATGCAGCCAGCCACAAGAGGAAGAGGATATTATGGACATCCCATTGGATGACCCAGAGGCCAATAAAGCGGCCGCCAAAATTCAGGCCGGCTTCCGTGGTCATATGACCCGGAAGAAGATGAAACCAGGCGAAAAGCCCGGTGAGGAGGTGAGCAGCAGTGGTGAGGCCCTCAACGGCAGCCAAGGGGACTCAGGAGGAACAGACGGAGTAGAGACAGACGGCACATCTGGACCAGAACAGTGA

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0031514 motile cilium cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-337 Predicted to enable calmodulin binding activity. Acts upstream of or within cilium movement. Located in motile cilium. Orthologous to human SPA17 (sperm autoantigenic protein 17).

Ensembl:

ensembl_id ENSDART00000110665

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016971 lncRNA upstream 315132 21950231 ~ 21952715 (+) True XLOC_008477
TCONS_00018948 lncRNA upstream 407430 21780855 ~ 21860417 (+) False XLOC_008474
TCONS_00016966 lncRNA upstream 424541 21781001 ~ 21843306 (+) True XLOC_008474
TCONS_00018947 lncRNA upstream 437830 21780700 ~ 21830017 (+) False XLOC_008474
TCONS_00018949 lncRNA downstream 64447 22351365 ~ 22366522 (+) False XLOC_008483
TCONS_00018950 lncRNA downstream 66107 22353025 ~ 22366522 (+) True XLOC_008483
TCONS_00018951 lncRNA downstream 254426 22541344 ~ 22551028 (+) False XLOC_008488
TCONS_00018952 lncRNA downstream 254446 22541364 ~ 22558972 (+) False XLOC_008488
TCONS_00018953 lncRNA downstream 254446 22541364 ~ 22561137 (+) True XLOC_008488
TCONS_00016973 mRNA upstream 242893 22014029 ~ 22024954 (+) True XLOC_008479
TCONS_00016970 mRNA upstream 286301 21947117 ~ 21981546 (+) False XLOC_008477
TCONS_00016969 mRNA upstream 324284 21882419 ~ 21943563 (+) True XLOC_008476
TCONS_00016968 mRNA upstream 395023 21862373 ~ 21872824 (+) True XLOC_008475
TCONS_00016967 mRNA upstream 396376 21862295 ~ 21871471 (+) False XLOC_008475
TCONS_00016975 mRNA downstream 24885 22311803 ~ 22325973 (+) True XLOC_008481
TCONS_00016976 mRNA downstream 46860 22333778 ~ 22348626 (+) True XLOC_008482
TCONS_00016977 mRNA downstream 103158 22390076 ~ 22431585 (+) False XLOC_008484
TCONS_00016978 mRNA downstream 107156 22394074 ~ 22431585 (+) True XLOC_008484
TCONS_00016980 mRNA downstream 148542 22435460 ~ 22444746 (+) True XLOC_008486
TCONS_00016972 other upstream 264651 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016964 other upstream 497838 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016960 other upstream 552182 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016955 other upstream 820047 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016954 other upstream 829888 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016979 other downstream 127206 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016984 other downstream 435764 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other downstream 435794 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016990 other downstream 1091153 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016993 other downstream 1159271 23446189 ~ 23450686 (+) True XLOC_008495

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_03972493_03983836.mRNA False 2338 mRNA 0.44 11 CI01000072 3972401 ~ 3983836 (-)