RNA id: TCONS_00016975


Basic Information

Item Value
RNA id TCONS_00016975
length 2316
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_008481
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22311803 ~ 22325973 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGTCCCGTCTGCATTCTCAGAGACGTGCCCTGAGTGGACAAATCATGCTGATTGTGTGGGAGAGAAACCCAGCGCTGCTCTCAAGATGAAGGCAGAGCGGGAGGCATCATGCAAAGAGACAGCCATTCCTTCACTCTTTCTTCTCCTGTGGCTTTTCATCTTTTCCTTGGCAGATGTAGGTGGAGTAAACATCAGCAGCCCGTCTCCTGTAGTGCGAGGAACACTAGGAGGCTCGGCTCTTCTCTCGGTGACCTACACCAGCACCAGTTTAGACCATCCTGTCATTAAATGGCAGCTGAAGAGGGACAAACCCGTCACTGTGGTCCAGTCTATTGGAACTGACATCATTGGGAACTTGAGACCTGAATACCGTGGCCGAATCCTCCTGTATGAGAACGGCTCCCTGCTCCTGCATAACCTGCGGCTGTCTGATGAGGGCTCCTATGAAGTGGAGATCTCCATCACTGATGACACCTTCACTGGGGAGAGGCACGTCAACCTCACTGTGGATATTCCAGTGTCCAGACCATTTATACACATGGTGGCCTCGTCTGTCCTGGAGCTGACCGAGTTCTTCATACTCAACTGCACTCATGAAAGCGGCACCAAACCCACCTATAGCTGGCTGAAGGGTGGCAAATCTCTAACCAATGACTCTCGTCTGCTGTTGTCACATGACCAGAAGGTGCTGACCATCTCGCGTGTAATGATGTCAGATGATGATGTATACAGCTGTAGGGTGGAGAACCCCATCAGCAGCATGAAGAGCATGCCGGTCAAACTCACTGTCTACAGACGGAGTTCTCTCTATATCATCCTCTCGACAGGAGGCATTTTCTTACTCATCACCCTGGTGACTGTGTGCGCCTGCTGGAAACCCTCCAAAAAAAAAAGGGAACAGCTTGCCAGACAAAGTGTAGCCGAGCAGAGCAACGGCAGTCATGAGGTAGTTGATATTGTGCCTGCTAGAAATTACCATAATCGTCGGAATCCAGGTGGATTGTATGTTCTCAATGAAACGgattTCCCTGGGGGAACAGATGAGTCTTCTGGTAATTATATCAACCCTATTGATCCTCTCAGTCCACCTTGTTACCCCAACATGGCTCCTCCTCCTTCCTCACAATCTCCAGATGCTTATATGCATTCAGGAAGAAGATACCCACGCACCCCTGTGCCGTCTCCTCCACCGACCCCTCACGGGACATTCAGTCCACCCCTGTCTTGTCCAATATATCCGGGTAGCTTAACGCGCAAGCCCCACCCACCAAGGCTAAGCTCCTCCCCTTCACACGCTGAAGATCCTCCCACTGATGGAGAAAACACTATGCACCACCACAGCCTTCCCAGATGAGCACGACTGAGGATGGAcaaatcatcaccttagaattataaggttctatctgacatttttgtcaaaattattcACATATCAAAGTTATTCCCATATTCTTATtacatgacaacttatttacatcatgggatgttttttataagttgtttacattttaagactttttattttaaaaacaattgttacacacatactgttcgCTATGGACAGCAAAAATTTTAAAGCTGATGCCGATGCAGattgaaccttataattccaagtgacAAAATGTAAAGGATAGTGTTTGATTATGAGACTTTGCATAGACTTTTCATTAATATTGGCACCCTTGGCAGTCAAAAGATGAATAAAAACTTAACTATTTTTGTGCCAAAAAAGTATATACTCTAACTTAAAATTTTTATCACACCTGTGTGATGAGAAATTTAAAGTGGTAAAGCCATGAAAAAACACGCTGGCCAAACTTAACTATTCAACACAATGGGTGAATTCTGGGTTGCCAGATTAAGAAtcttcagatttaaaaaaagttataatattttaagcaaaatattttcaGTGCAAtctttccatatatttaccaAGTGTGCCAATATTAGTGGAGGTCCCTCTATGTGGTGCTGTATGTGGTAAATCGCAATTTAAAACAGTCTAAAATCAATTTTAGTGTTTTAAGATTTCCAAAAACTTTAGGTAAATGATTGTTTACAGGACCGAAACATAAAGATCATTAGTTGTTAAGCAAAGAACTAATTTCCCAGACAAGCACATtgatgatttattttgttttctaattaaatacatttttttacatcattGTTTAGCTGTGGTTAAgcttaaactaaactgaaataatgctataaatagaaaaatatttaatttgaggTATAACAAAGCATTATGGGAATCTGTTTGAATCTGCTGTAAATACTTTgtcattattaaaatgattttattatt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005911 cell-cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-198 Located in cell-cell junction. Is expressed in several structures, including brain; digestive system; eye; pleuroperitoneal region; and radial glial cell. Human ortholog(s) of this gene implicated in megalencephalic leukoencephalopathy with subcortical cysts 2A and megalencephalic leukoencephalopathy with subcortical cysts 2B. Orthologous to human HEPACAM (hepatic and glial cell adhesion molecule).

Ensembl:

ensembl_id ENSDART00000150182

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016971 lncRNA upstream 359088 21950231 ~ 21952715 (+) True XLOC_008477
TCONS_00018948 lncRNA upstream 451386 21780855 ~ 21860417 (+) False XLOC_008474
TCONS_00016966 lncRNA upstream 468497 21781001 ~ 21843306 (+) True XLOC_008474
TCONS_00018947 lncRNA upstream 481786 21780700 ~ 21830017 (+) False XLOC_008474
TCONS_00018949 lncRNA downstream 25392 22351365 ~ 22366522 (+) False XLOC_008483
TCONS_00018950 lncRNA downstream 27052 22353025 ~ 22366522 (+) True XLOC_008483
TCONS_00018951 lncRNA downstream 215371 22541344 ~ 22551028 (+) False XLOC_008488
TCONS_00018952 lncRNA downstream 215391 22541364 ~ 22558972 (+) False XLOC_008488
TCONS_00018953 lncRNA downstream 215391 22541364 ~ 22561137 (+) True XLOC_008488
TCONS_00016974 mRNA upstream 24885 22267847 ~ 22286918 (+) True XLOC_008480
TCONS_00016973 mRNA upstream 286849 22014029 ~ 22024954 (+) True XLOC_008479
TCONS_00016970 mRNA upstream 330257 21947117 ~ 21981546 (+) False XLOC_008477
TCONS_00016969 mRNA upstream 368240 21882419 ~ 21943563 (+) True XLOC_008476
TCONS_00016968 mRNA upstream 438979 21862373 ~ 21872824 (+) True XLOC_008475
TCONS_00016976 mRNA downstream 7805 22333778 ~ 22348626 (+) True XLOC_008482
TCONS_00016977 mRNA downstream 64103 22390076 ~ 22431585 (+) False XLOC_008484
TCONS_00016978 mRNA downstream 68101 22394074 ~ 22431585 (+) True XLOC_008484
TCONS_00016980 mRNA downstream 109487 22435460 ~ 22444746 (+) True XLOC_008486
TCONS_00016983 mRNA downstream 122483 22448456 ~ 22538843 (+) False XLOC_008487
TCONS_00016972 other upstream 308607 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016964 other upstream 541794 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016960 other upstream 596138 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016955 other upstream 864003 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016954 other upstream 873844 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016979 other downstream 88151 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016984 other downstream 396709 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other downstream 396739 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016990 other downstream 1052098 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016993 other downstream 1120216 23446189 ~ 23450686 (+) True XLOC_008495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU323478 True 2128 lncRNA 0.46 8 CI01000072 3956943 ~ 3964272 (+)