RNA id: TCONS_00016973


Basic Information

Item Value
RNA id TCONS_00016973
length 2448
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_008479
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22014029 ~ 22024954 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcctgagacgggaaaacaACATGACAGACGCAAACTCCGATGTGAAGGACTCTTTTAAAGATGGCAGCCTGGAGGggtttagttattttaaaaaagatgAGTTTGAAAGTGACTGGGAGAAACTGGTTGAGCGCAAGTTTGGTCGGGTCTATAAGGTGAAGCTTAAAGTCTTGCGTGAAACATGTGCTCTGAAGACCACAACCAATGACTACAGGAACATAATGGAGATTTCCAAAATTGGAAGAATGAAGTTCAATTATTTGATCTCCATTTATGGAATCTGCAAAGATCCGCCTGCTTTAGTGATGGAATATATGCGAAAGGGATCCCTGGATAATCTCCTTAGCAATCATTTGTTAATGTGGCCCAAAAAGTTCCAGATGATCCATGAGATGACGATGGGTATGAACTTTCTGCACAGCATGAAGCCGCCAATCCTTCATTTGAACTTGAAACCGGCCAACATTCTTTTAGATGATCATCTGCACGTGAAGatttcagaTTTTGGCTTCATTAAGTGGGAGTTTTCTAGTAAGACAGAGTTCATTGAACACCTGATGGCCAGAGGCAACATAAACTATGTGCCTCCAGAGACCTTAAGCCAGAATCCTGAACCTCCTGGAACAAAGTATGATGTGTACAGCTTTTCCATTATAATGTGGGAGATTCTCACTCAAAAGCGCTCATATGCAGGTCTGTCTATGACAGAAATATTAATCAGAGTGTCATCTGGCAAAAGGCCTGGTGTAGAGAAGATCCCTGAAGACAAGCCTCCTGAGTGCGAGGACATGATTGGTGTCATGCAGCAATGCTGGAATCAAGACAGCAGAAGCAGACCTCCTTTCTCTAAGACTGTTCGACTGACTGAAGTCCTCAGTGAAGTCCTGAAAATTCCAGATACGTTTTCACGGAGGGAGATAAGAAAGCGTCTGCCTGAACAGCCCAAGAAAACGGCTGACTCCTCAGATGATTCAAGCATTCAGTCTCTGCTTGTAAGAAAAGACTTTAATAGTTTCAAGAAAGTTGTACGAAAAGAGCATGTGTCAATGCTCTTTCAAGACAACAACTCTCTCCTTCATCACGCCGTGGCAGGCGGGGACAGAGAAAGTGTGCAGATGGTCCTGAATCTGGGAGCCTCGGTGAATTGCCAGAGTGTAAAAGGCTACACTCCTCTCATCGTCGCAGTTCTGCACAAGTTTTATGAGATCTGCAGCTTGCTGACAGACTGTGGGGCTGACGTCAACCTCAGCGATGGCGACCAGTGGACCGCGCTACATTTTGCCGTACAGGCTGGCGACGACCGAGCCACTCGATTTTTGCTAGACAATAAGGCGAGAGCTGATGCCAAGGAAAAGGATGGATGGACGCCTTTGCATCTAGCAGCTCAAAATGGGCACGAGAACATTGTGAGAATCTTACTCCGCCGTCTTGACAGCGTGGATGTGCAGGAGCACCAATCATGCCGTACAGCGCTTCATGTAGCTTCTATTTATGGCCACATAAACATCGTCAAGCTCTTGCTCAATAAAGGAGCTGACATCGACAAACAGGATAACAACCAATCCACTGCCCTACACCTGGCGGCAGAGGAGGGGCACTTCAGGGTGGTCCGTTTACTGGTTAATAGTGGAGCTGATGTGAATAAAGTTGATGAGCAAAGCTACAGCTCTCTTCATTTTGCAGCTCTGAACGGTTATACAGGTATCTGTAGACTCCTCTTAAGTAAAGGAATCGACCCCAACAGCAGAACTAATAAGAACTGGACCGCCATGCACCTGGCAGCCCTGAAAGGCCATCCGGAGATTATCCTCACCTTGGAGGAACACCAAGGCTCAGTCAACATTCAAGGGAAAAACGGCTGGACGCCTTTGCATCTTGCCTGTCATCATGGACAAGAGGAGGTGGTGACTGGGCTGCTGACAGCAGGTGCTGATCCAAACTTGGCTGAGGATAACGGCTGGACTCCCCTCCATTTAGCCTGTAATAGCAGCAGCTTCCCTAGCGTGCTGCAGTTGATATCCCATAAAGCTAATGTGAATGCTCAGAATAACAGCCAGTCAACACCCTTGCATTTAGCCGCCCAGCTCAGCAACATCCCCATCATCAAAGCCCTTCTGATGAATAATGCACAGCGGGAGATGCAGGACTCCAAAGGATGTACCGCCTTAACCTTGGCTCAACAGTGCAACAATTCAGAAGCCGTGGAGCTCCTGGACAGCTAGTGCTTGGGTTGAGAGCGAGCCATGTTCGGTGACAGATAACTCGGCCATTAGAGGGAGTACAACATTGATTTCTCCCATCGATTTCCTTCCTCCTGCAAAGCCTGCTCTTATAAACACtctggctgttgtttttgatttAGATTCCTTGAATTTAACGCCTTTGTTTGGGTTTGTGAAGAGCTCAGGTGTGCTCTAAGTGTTATGAATGAGGGGTTTTATGACCAGC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-071015-4 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human ANKK1 (ankyrin repeat and kinase domain containing 1).

Ensembl:

ensembl_id ENSDART00000079504

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016971 lncRNA upstream 61314 21950231 ~ 21952715 (+) True XLOC_008477
TCONS_00018945 lncRNA upstream 153612 21780598 ~ 21860417 (+) False XLOC_008474
TCONS_00018949 lncRNA downstream 326411 22351365 ~ 22366522 (+) False XLOC_008483
TCONS_00018950 lncRNA downstream 328071 22353025 ~ 22366522 (+) True XLOC_008483
TCONS_00018951 lncRNA downstream 516390 22541344 ~ 22551028 (+) False XLOC_008488
TCONS_00018952 lncRNA downstream 516410 22541364 ~ 22558972 (+) False XLOC_008488
TCONS_00018953 lncRNA downstream 516410 22541364 ~ 22561137 (+) True XLOC_008488
TCONS_00016970 mRNA upstream 32483 21947117 ~ 21981546 (+) False XLOC_008477
TCONS_00016969 mRNA upstream 70466 21882419 ~ 21943563 (+) True XLOC_008476
TCONS_00016968 mRNA upstream 141205 21862373 ~ 21872824 (+) True XLOC_008475
TCONS_00016967 mRNA upstream 142558 21862295 ~ 21871471 (+) False XLOC_008475
TCONS_00016963 mRNA upstream 241190 21744680 ~ 21772839 (+) False XLOC_008473
TCONS_00016974 mRNA downstream 242893 22267847 ~ 22286918 (+) True XLOC_008480
TCONS_00016975 mRNA downstream 286849 22311803 ~ 22325973 (+) True XLOC_008481
TCONS_00016976 mRNA downstream 308824 22333778 ~ 22348626 (+) True XLOC_008482
TCONS_00016977 mRNA downstream 365122 22390076 ~ 22431585 (+) False XLOC_008484
TCONS_00016978 mRNA downstream 369120 22394074 ~ 22431585 (+) True XLOC_008484
TCONS_00016972 other upstream 10833 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016964 other upstream 244020 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016960 other upstream 298364 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016955 other upstream 566229 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016954 other upstream 576070 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016979 other downstream 389170 22414124 ~ 22414253 (+) True XLOC_008485
TCONS_00016984 other downstream 697728 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other downstream 697758 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016990 other downstream 1353117 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016993 other downstream 1421235 23446189 ~ 23450686 (+) True XLOC_008495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_04125176_04131163.mRNA True 4057 mRNA 0.42 7 CI01000072 4123558 ~ 4131448 (-)