RNA id: TCONS_00016978


Basic Information

Item Value
RNA id TCONS_00016978
length 1692
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_008484
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22390076 ~ 22431585 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTAGCTAATcgcaattaatctttgcccaaTACTAATGAATAGGCTATTCAatgtattattttctttaaaaaattactaGGCTATgttcactgtaattttattttgtttatggtAGAAGGGATGAAAAACAATTATTTGTTTCAAATTTAGTATCCTCTCAATAAGCAGATTTTTTCAATCTGCATTACATCAATCACCAACTGTATAAAAAGTGCAGCTACTGCTAGAAAAGTTTATGTGGAGCTGTCTACATGAGTACTGTCGGTCAGGGTCTACATTCATTATTTGAGAGGGCGCTACGCCTTTAAGAGTTTCCGAGTGCTGCCTGCGAAACTTTGGGAGGCCGTTGGACTGCTGGGTGCTGCACTTTGGATAATGAAGGAAGTGACGAATCCGCATTactaggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaagaaaaactCAAGAGCAGAAAAAACAGAAACTAAGACAGAAGTCAGCGTGAAGAGCTGAATGAAGGCACTCGTCAGTAGAGGCATGAACACGAGTCAGCGTGAGCTCCCGAATCAAAGTTCCCTCAATGAGAGGCGCGAGGCGagtgaaaacagcagattactccGTGCGTGACGCTCCGTACTCCACTCTCCCCAATGTTTATTTACCAGACGTGAGGAGGCTCTAGACCGGCTTTAAAATACTTTATGAATTCGTTGGTGTATCCAGCTTCCACAAAATATGGGTGAAGTTGTGTAAGTGGAGCCGCTGTGATGTTTTGAGGGGGTCTCGTGGAATGAGTCGACTGTTATTCCCGTGGATAGTGCTTCTGAACTCGCGCTTTGGGTTTTAGGATCATCTGGAATGTTTGCGTGGTGGATTTGGTCGGGTTCAGTTCGGTTAACTCTTGTGGTTTTAGTGCTCACGGTGTTGTCGGTAGCTCGCGGGTCTGCGTCTGAGCTGAAGGTGAGGGTCCGCTTGACCGATGGACAGATCACGGATGAACTTCTGGAGGCGGACAGCGAGAAGGACTCCATCACCGTGGAGTTTAAACAGGGGGACGGGACTCTGATCACTTTTGTGGCCGATTTCAAGCAGGATGTGAAGATTTTCCGAGCGCTGATTCTGGGAGAATTGGAGAGAGGGCAGAGCCAGTACCAAGCGCTCTGCTTCATCACACGGCTCAACCACAATGAGATCATCCCCAGTGAATCCATGGCCAGACTGAGACAGaAAAATCCCCAGGCCATCCGCACAGCAGAGGAGAAGAGAGGCACTGAGATGCTGAGCATGAACGTAGCGGTCAATTTGACACGGACCTGGCAGCTGAGTGCCCACATCCACAACATGTGCAGCGTGGCCCATGAGGCCGTGTACACGCGCGAGGCTGATGTCAGACACTGGCTGGACCGAGgCATGGAGAGCTCTATGTTCGAGCCTCAGGCAGTGGAGATGACTGGCCTGCAGAGCTGCGGGACGGTGAAGGACCTGTGGCAGCCCTGCTCCTGCAGCTACAACCTCAGACTGGAGTGGTACCCATGCTTGCTAAAATACTGTCGCAACCGGGATGTCTCCGGCAGGGGCAGCCCATACAAATGTGGCATCAAGAGCTGCAGCAAAGGCTACCAGTTTACGTACTATGTGCCACACAAACAGCTGTGCCTATGGGAGGAAGAGACCTAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090917-1 Orthologous to human OAF (out at first homolog).

Ensembl:

ensembl_id ENSDART00000109931

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018949 lncRNA upstream 27552 22351365 ~ 22366522 (+) False XLOC_008483
TCONS_00018950 lncRNA upstream 27552 22353025 ~ 22366522 (+) True XLOC_008483
TCONS_00016971 lncRNA upstream 441359 21950231 ~ 21952715 (+) True XLOC_008477
TCONS_00018948 lncRNA upstream 533657 21780855 ~ 21860417 (+) False XLOC_008474
TCONS_00018951 lncRNA downstream 109759 22541344 ~ 22551028 (+) False XLOC_008488
TCONS_00018952 lncRNA downstream 109779 22541364 ~ 22558972 (+) False XLOC_008488
TCONS_00018953 lncRNA downstream 109779 22541364 ~ 22561137 (+) True XLOC_008488
TCONS_00018954 lncRNA downstream 775574 23207159 ~ 23207464 (+) True XLOC_008490
TCONS_00018955 lncRNA downstream 835073 23266658 ~ 23268377 (+) True XLOC_008492
TCONS_00016976 mRNA upstream 45448 22333778 ~ 22348626 (+) True XLOC_008482
TCONS_00016975 mRNA upstream 68101 22311803 ~ 22325973 (+) True XLOC_008481
TCONS_00016974 mRNA upstream 107156 22267847 ~ 22286918 (+) True XLOC_008480
TCONS_00016973 mRNA upstream 369120 22014029 ~ 22024954 (+) True XLOC_008479
TCONS_00016970 mRNA upstream 412528 21947117 ~ 21981546 (+) False XLOC_008477
TCONS_00016980 mRNA downstream 3875 22435460 ~ 22444746 (+) True XLOC_008486
TCONS_00016983 mRNA downstream 16871 22448456 ~ 22538843 (+) False XLOC_008487
TCONS_00016982 mRNA downstream 16871 22448456 ~ 22538843 (+) False XLOC_008487
TCONS_00016981 mRNA downstream 16871 22448456 ~ 22538843 (+) True XLOC_008487
TCONS_00016985 mRNA downstream 291099 22722684 ~ 23188894 (+) False XLOC_008489
TCONS_00016972 other upstream 390878 22003082 ~ 22003196 (+) True XLOC_008478
TCONS_00016964 other upstream 624065 21767524 ~ 21770009 (+) True XLOC_008473
TCONS_00016960 other upstream 678409 21711660 ~ 21715665 (+) False XLOC_008472
TCONS_00016955 other upstream 946274 21447656 ~ 21447800 (+) True XLOC_008467
TCONS_00016954 other upstream 956115 21437876 ~ 21437959 (+) True XLOC_008469
TCONS_00016984 other downstream 291097 22722682 ~ 22762438 (+) False XLOC_008489
TCONS_00016986 other downstream 291127 22722712 ~ 22733033 (+) False XLOC_008489
TCONS_00016990 other downstream 946486 23378071 ~ 23378188 (+) True XLOC_008494
TCONS_00016993 other downstream 1014604 23446189 ~ 23450686 (+) True XLOC_008495
TCONS_00017027 other downstream 2132183 24563768 ~ 24569062 (+) False XLOC_008513

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_03908090_03922942.mRNA True 1485 mRNA 0.40 4 CI01000072 3907387 ~ 3922942 (-)