XLOC_008492


Basic Information

Item Value
gene id XLOC_008492
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23266658 ~ 23268377 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018955
tgaactatccctcctttaattgtcaaaaatatacattttatacaggaattgactgAGACCCATTCTCTTATGTAGTGTAGTTTGCGCTAAAATTGTAAATGGTATCTTTTACTCGCTCATGTCTTTCTGAATTCATTTTCCCTGTGGAAATATTTTGTTTGGCAATGGGGTCCAAAAATAAATGGATTCCCTACatggataaaatatattttggaaaTCTCTCTCAAATTTAAGTCATAGTAGTTTTGAATTGCATGAGCATAAACAAAttatgtactttaaaaaaaaaataggtgaactttaatatttcaagCCGTTGTCTTTTATTGCACCAGCACATGTGAATGCACTTGTAACTCCATTAAAGTGAGTCTGGAGGAGTCACGATGGTTGTCGCGTGGCCCAGTTTTAGTCTCTACTAACCCCTAGTGTTCTTGAGAGTGCTGCACCGGGATTGCAGGTACTTCCACGTCTCAGTCTTGTAGGTACACGAATAACCTTGAGAGCTTACGATACGTCGAGCTGTTTATTTACCAGCGTTAACTCTCGGTTTGTAGTTTCTGTTGCCTTGAAGCATATGATGGTTTAATACTGATTTTtgcttcttgtttgtttgtttttttactgcacCATATGAAGTCTAGAGATGAGAAGGTTATACacttgttttttaatcattttgttcGTTTTACTGTACTACTATTGTGTGATGGACGCGTGTGAGTTTGTACAAATATTTTGGCACAGCGTACTAATTTGTGCTATGATACTGTCACTTTAAAATCAACGTGTGTAAAGTTACTTATACATAGAATACACGGAAACGGcaatgttttgtttcattttgcatTCCTGTAcatgtcagaattttatttttgtttactgatGTGAATATTACTGTGAGCAGTGCCATATATGTTTAGGTATGTCCGTAATTTTGTTCTGCAACCCAGATGAAAAAAGGCCTTGTTTAGTGTAAAGAGTGAACGAAATCCCTCACGAACTCTTTGGAAAACGTTTCCATCGTCGCTTCTGTTGGCTTTGGTCAGTGACATCATGGTGAATCTCTGTCTGTTTTCTGGAATGTCTTGAATCAGACCACAAGAGGGAGCTCTCTCCTCATTTTGCCATAACTTGCCTGAGTGTTTCAGGGTTTCTTTTGTGCTAATTCTCATATCACTTTGGAAGTATGCACAGCGCTATACTGTTAATTAAAACAATAGAACAAACCTTATGGTCTCCGTGTCGTCTTTAAGGGTTTGCTTTTTAAGAACATCTGCAAGTCCCCTACTCACATTTCATG

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0017119 Golgi transport complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0099023 vesicle tethering complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018955 True 1303 lncRNA 0.37 2 23266658 23268377

Neighbor

gene id symbol gene type direction distance location
XLOC_008491 cbl coding upstream 1253 23208042 ~ 23265405 (+)
XLOC_008490 NA coding upstream 59194 23207159 ~ 23207464 (+)
XLOC_008489 grik4 coding upstream 77764 22722682 ~ 23188894 (+)
XLOC_008488 NA coding upstream 705521 22541344 ~ 22561137 (+)
XLOC_008487 arhgef12a coding upstream 727815 22448456 ~ 22538843 (+)
XLOC_008493 rnf26 coding downstream 88223 23356600 ~ 23358807 (+)
XLOC_008494 CR847979.1 coding downstream 109694 23378071 ~ 23378188 (+)
XLOC_008495 phykpl coding downstream 175288 23443665 ~ 23451449 (+)
XLOC_008496 NA coding downstream 199607 23467984 ~ 23505657 (+)
XLOC_008497 si:dkey-182i3.9 coding downstream 254960 23523337 ~ 23542144 (+)
XLOC_008463 BX663520.1 misc upstream 2014376 21252191 ~ 21252282 (+)
XLOC_008485 CR848033.1 non-coding upstream 852405 22414124 ~ 22414253 (+)
XLOC_008483 NA non-coding upstream 900136 22351365 ~ 22366522 (+)
XLOC_008478 BX572077.3 non-coding upstream 1263462 22003082 ~ 22003196 (+)
XLOC_008505 NA non-coding downstream 731192 23999569 ~ 24005283 (+)
XLOC_008506 NA non-coding downstream 864177 24132554 ~ 24132837 (+)
XLOC_008507 NA non-coding downstream 881591 24149968 ~ 24162100 (+)

Expression


Co-expression Network