XLOC_008493 (rnf26)


Basic Information

Item Value
gene id XLOC_008493
gene name rnf26
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23356600 ~ 23358807 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016989
AGTCAAAGTCCCTATGTATTGTCTTTGGCTAAGTGCAGCCGTGTGTCTGCGCAGCCCGAGCGCCTAGTTGATCCCCTtcatgtatgtttttttgcaaAGCGGAAACAACAGGACCCAGACAAACCGAGAAGCTTTCGATTATCTCGATtaataacagaaagaaagaaacatcTGAGCTTGTCGTCGCCTCGGAGCTTCACAAAACAAACCGGGTAACTGAATTACACAATGTACACAATGGACTCGTTCTCGGGGTGTACAGATTTATACAACAAGCCAGCACGACGCTGTTTCGATTTTCAAACGTAAACATCCGCCGAGCAGCATCGTCCATGTGTTAGCAGCAACTTCATGATGCTAACCGTGTTTATGAAGACTGTACCTGTCCAAAACAGATGATATGGGATTTCTAACTAATCCTCGGTTATAGTACGACCGGAATGTCTTTGTTTTGAATCTTCCAAGACGGCAGGTTATGATACGAAAGAGTTAGCACGCGAGCTAACTCGGCTAACGTTATCAAAGCTGCGTGATTGTGtagccactaaactgaactgtCGTTTGACACCACGAACAACACGACAGATGATATACAGTTCATCTCAGCGAACTGAAGTGGCATTTTACGAGCGGACATGCTTATTATGGGTGTGCTGAACATTGTGTTTAGTACAGTGGGAAAATGTGTAGATGTCATTTGCCTCCTTCTGGATCTAAACTTCGTGATCGTCAGCTCATTGATTCAGCTGTTGGTTTCAGTGCTCTCCTTCATCAATAGTCTGCCCATGCTCCTCACAAACTCGGTGTTTGAGTGCTGGAACCTCACTCTGCTGTGCATCATCACCATGAGGGACGGAGTGACCGTCGTGACCCATAACATGGTCGGAGGCTGGACTCAGCTGCTTGGAGGTGTGTTGGAGAGCTTCAAGATCATCGGATACCTGTCTTCACATCTACTGCTACGCACCAAAGAGCTCCTTCACCGTGGCCTGCTGTCCGGACACGGTTTGCTTCGACAGGCTTGGGAAGGCTTTGGGATTTTATTCAGCCTGCTGCTGTATTTTATCAACACCATAGTCAACCTGCTCCTCATAGGCACTCAGAACTTATACTCGCTGTTGGTGAGCACTGTGGAAGCGGTGTCATGTCCTCTGCAGAAAGCTCTAGAGCTGGCGTTAACCGTGCTGACCTTTCTTTACAGCAGTCTCGTTGGCACCTCCATCCTGTTGTGGACACCATGCAGACTAGCGATGGAGTTTTTGGGATCAGCGTGTCACATTTTTGTGAGCATATTTTTGCTCAATTCCTACGGGCTGCTTCTCACGTTGGTGATCATCACCGGTGCGACTGTGTATCTGAACCCTGCGCTTCCACGACAAGTATCTCTGCGCATGATCACCTATGTTAACACTGTACCTATTTTACGCCGACTCCAAATGGTTCTACAGCGACTCTATGTGCTGGAGAGGAATGTTTGGCAGCGATTAGCATGGCATCGCAGCCGGATTGGCCTCTTAGTAGCTGCAGAAAGAGATATTGGTCAAGCTGAGCCCAATATTGAGCCACAAGTTGAGCTAAATGTACCAAACCAGGAGGTGGAAGATGTTCCCGAAGACGCCCCCCAGCCTGACATTCCACTTCCCAGTTCCAGCGCTCACAGACCACTCCGAAAGTTTCCATCTGAGGACAGCTGCAGAGGCCCGCCAACAGACAACCTTCTCAATCTCCTGCAGGAgcaagaggagaggaaaaagtGTGTGATTTGTCAGGACAGCACTAAAACTGTTGTGCTCTTGCCGTGCCGTCACTTGTGTTTGTGCAGAGAGTGCACCAACATTCTTCTGCGCCAGCCAATGTACCAACAGAACTGCCCTCTGTGCcgccacatgatccttcagacCATGGATGTGTATCTCTGAGGCCAAACGTTTACGGATGTGTTTGTCATCCtcaggtgtttttgtttttttccctcttcttCCGAGCAGGACTATTGCAGAAATGTGTCCATTCCACTACTGATGCTTGTAAATAGATTTGAATCTCAAAGCTTTTATAAATTGTGATGGTGAGGATTGtgtgcttttttatgtttttatattcattgtCACTTTTTTCATCAGCTTATAAAAGCAACACTATTTTTCTCATGAAGCAGAAATATCATATGAATGTAAGCTTTGTATTAAAAATTGGAGGTTAATTGTG

Function

symbol description
rnf26 Predicted to enable metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF26 (ring finger protein 26).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-060727-1 Predicted to enable metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF26 (ring finger protein 26).

Ensembl:

ensembl_id ENSDARG00000074074

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016989 True 2208 mRNA 0.46 1 23356600 23358807

Neighbor

gene id symbol gene type direction distance location
XLOC_008492 NA coding upstream 88223 23266658 ~ 23268377 (+)
XLOC_008491 cbl coding upstream 91195 23208042 ~ 23265405 (+)
XLOC_008490 NA coding upstream 149136 23207159 ~ 23207464 (+)
XLOC_008489 grik4 coding upstream 167706 22722682 ~ 23188894 (+)
XLOC_008488 NA coding upstream 795463 22541344 ~ 22561137 (+)
XLOC_008494 CR847979.1 coding downstream 19264 23378071 ~ 23378188 (+)
XLOC_008495 phykpl coding downstream 84858 23443665 ~ 23451449 (+)
XLOC_008496 NA coding downstream 109177 23467984 ~ 23505657 (+)
XLOC_008497 si:dkey-182i3.9 coding downstream 164530 23523337 ~ 23542144 (+)
XLOC_008498 MARK4 coding downstream 192083 23550890 ~ 23641516 (+)
XLOC_008463 BX663520.1 misc upstream 2104318 21252191 ~ 21252282 (+)
XLOC_008485 CR848033.1 non-coding upstream 942347 22414124 ~ 22414253 (+)
XLOC_008483 NA non-coding upstream 990078 22351365 ~ 22366522 (+)
XLOC_008505 NA non-coding downstream 640762 23999569 ~ 24005283 (+)
XLOC_008506 NA non-coding downstream 773747 24132554 ~ 24132837 (+)
XLOC_008507 NA non-coding downstream 791161 24149968 ~ 24162100 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_03396929_03398233 RNF26 coding CI01000072 null 3396647 ~ 3399019 (-)