XLOC_008484 (oafa)


Basic Information

Item Value
gene id XLOC_008484
gene name oafa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22390076 ~ 22431585 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016977
tcgctggttcgagcctcggctgggtcagttggtgtttctgtgtggaTGCTCACGGTGTTGTCGGTAGCTCGCGGGTCTGCGTCTGAGCTGAAGGTGAGGGTCCGCTTGACCGATGGACAGATCACGGATGAACTTCTGGAGGCGGACAGCGAGAAGGACTCCATCACCGTGGAGTTTAAACAGGGGGACGGGACTCTGATCACTTTTGTGGCCGATTTCAAGCAGGATGTGAAGATTTTCCGAGCGCTGATTCTGGGAGAATTGGAGAGAGGGCAGAGCCAGTACCAAGCGCTCTGCTTCATCACACGGCTCAACCACAATGAGATCATCCCCAGTGAATCCATGGCCAGACTGAGACAGaAAAATCCCCAGGCCATCCGCACAGCAGAGGAGAAGAGAGGCACTGAGATGCTGAGCATGAACGTAGCGGTCAATTTGACACGGACCTGGCAGCTGAGTGCCCACATCCACAACATGTGCAGCGTGGCCCATGAGGCCGTGTACACGCGCGAGGCTGATGTCAGACACTGGCTGGACCGAGgCATGGAGAGCTCTATGTTCGAGCCTCAGGCAGTGGAGATGACTGGCCTGCAGAGCTGCGGGACGGTGAAGGACCTGTGGCAGCCCTGCTCCTGCAGCTACAACCTCAGACTGGAGTGGTACCCATGCTTGCTAAAATACTGTCGCAACCGGGATGTCTCCGGCAGGGGCAGCCCATACAAATGTGGCATCAAGAGCTGCAGCAAAGGCTACCAGTTTACGTACTATGTGCCACACAAACAGCTGTGCCTATGGGAGGAAGAGACCTAG
>TCONS_00016978
AGCTAGCTAATcgcaattaatctttgcccaaTACTAATGAATAGGCTATTCAatgtattattttctttaaaaaattactaGGCTATgttcactgtaattttattttgtttatggtAGAAGGGATGAAAAACAATTATTTGTTTCAAATTTAGTATCCTCTCAATAAGCAGATTTTTTCAATCTGCATTACATCAATCACCAACTGTATAAAAAGTGCAGCTACTGCTAGAAAAGTTTATGTGGAGCTGTCTACATGAGTACTGTCGGTCAGGGTCTACATTCATTATTTGAGAGGGCGCTACGCCTTTAAGAGTTTCCGAGTGCTGCCTGCGAAACTTTGGGAGGCCGTTGGACTGCTGGGTGCTGCACTTTGGATAATGAAGGAAGTGACGAATCCGCATTactaggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaagaaaaactCAAGAGCAGAAAAAACAGAAACTAAGACAGAAGTCAGCGTGAAGAGCTGAATGAAGGCACTCGTCAGTAGAGGCATGAACACGAGTCAGCGTGAGCTCCCGAATCAAAGTTCCCTCAATGAGAGGCGCGAGGCGagtgaaaacagcagattactccGTGCGTGACGCTCCGTACTCCACTCTCCCCAATGTTTATTTACCAGACGTGAGGAGGCTCTAGACCGGCTTTAAAATACTTTATGAATTCGTTGGTGTATCCAGCTTCCACAAAATATGGGTGAAGTTGTGTAAGTGGAGCCGCTGTGATGTTTTGAGGGGGTCTCGTGGAATGAGTCGACTGTTATTCCCGTGGATAGTGCTTCTGAACTCGCGCTTTGGGTTTTAGGATCATCTGGAATGTTTGCGTGGTGGATTTGGTCGGGTTCAGTTCGGTTAACTCTTGTGGTTTTAGTGCTCACGGTGTTGTCGGTAGCTCGCGGGTCTGCGTCTGAGCTGAAGGTGAGGGTCCGCTTGACCGATGGACAGATCACGGATGAACTTCTGGAGGCGGACAGCGAGAAGGACTCCATCACCGTGGAGTTTAAACAGGGGGACGGGACTCTGATCACTTTTGTGGCCGATTTCAAGCAGGATGTGAAGATTTTCCGAGCGCTGATTCTGGGAGAATTGGAGAGAGGGCAGAGCCAGTACCAAGCGCTCTGCTTCATCACACGGCTCAACCACAATGAGATCATCCCCAGTGAATCCATGGCCAGACTGAGACAGaAAAATCCCCAGGCCATCCGCACAGCAGAGGAGAAGAGAGGCACTGAGATGCTGAGCATGAACGTAGCGGTCAATTTGACACGGACCTGGCAGCTGAGTGCCCACATCCACAACATGTGCAGCGTGGCCCATGAGGCCGTGTACACGCGCGAGGCTGATGTCAGACACTGGCTGGACCGAGgCATGGAGAGCTCTATGTTCGAGCCTCAGGCAGTGGAGATGACTGGCCTGCAGAGCTGCGGGACGGTGAAGGACCTGTGGCAGCCCTGCTCCTGCAGCTACAACCTCAGACTGGAGTGGTACCCATGCTTGCTAAAATACTGTCGCAACCGGGATGTCTCCGGCAGGGGCAGCCCATACAAATGTGGCATCAAGAGCTGCAGCAAAGGCTACCAGTTTACGTACTATGTGCCACACAAACAGCTGTGCCTATGGGAGGAAGAGACCTAG

Function

symbol description
oafa Orthologous to human OAF (out at first homolog).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090917-1 Orthologous to human OAF (out at first homolog).

Ensembl:

ensembl_id ENSDARG00000075851

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016977 False 810 mRNA 0.56 5 22390076 22431585
TCONS_00016978 True 1692 mRNA 0.49 4 22394074 22431585

Neighbor

gene id symbol gene type direction distance location
XLOC_008483 NA coding upstream 23554 22351365 ~ 22366522 (+)
XLOC_008482 pde9al coding upstream 41450 22333778 ~ 22348626 (+)
XLOC_008481 hepacama coding upstream 64103 22311803 ~ 22325973 (+)
XLOC_008480 spa17 coding upstream 103158 22267847 ~ 22286918 (+)
XLOC_008479 ankk1 coding upstream 365122 22014029 ~ 22024954 (+)
XLOC_008486 tlcd5a coding downstream 3875 22435460 ~ 22444746 (+)
XLOC_008487 arhgef12a coding downstream 16871 22448456 ~ 22538843 (+)
XLOC_008488 NA coding downstream 109759 22541344 ~ 22561137 (+)
XLOC_008489 grik4 coding downstream 291097 22722682 ~ 23188894 (+)
XLOC_008490 NA coding downstream 775574 23207159 ~ 23207464 (+)
XLOC_008463 BX663520.1 misc upstream 1137794 21252191 ~ 21252282 (+)
XLOC_008478 BX572077.3 non-coding upstream 386880 22003082 ~ 22003196 (+)
XLOC_008474 NA non-coding upstream 529659 21780598 ~ 21860417 (+)
XLOC_008472 NA non-coding upstream 670106 21707783 ~ 21719970 (+)
XLOC_008470 NA non-coding upstream 847158 21520410 ~ 21542918 (+)
XLOC_008492 NA non-coding downstream 835073 23266658 ~ 23268377 (+)
XLOC_008494 CR847979.1 non-coding downstream 946486 23378071 ~ 23378188 (+)
XLOC_008496 NA non-coding downstream 1036399 23467984 ~ 23505657 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_03908090_03922942 NA coding CI01000072 null 3907387 ~ 3922942 (-)