XLOC_008470


Basic Information

Item Value
gene id XLOC_008470
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21520410 ~ 21542918 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018944
CACcagttttccacatttatttcagCATAAGTGATTCATAAAACATCTCAGACTGTACCACTTAAAATGTTCGTATCTTTAAAACCCTCAGTAGGCAGGCAAGATCAAAAATTTCAACATGGCGGTGTCCAAAGTCACTGCTACGGGAAAACTTTTACATCTTATTGACCAAAAAACAAATGGGTTTCAAACTGGGCATGACAAATATTGCCACAAATGGTTGCGAGTAAAGAACACAaacaagataaaataaagaaacgGTGGCTCAGGATTCACACAAGTGCTGCACTGgaacttttaaaacattatacagTGGTCATTTCACAATATGTCGATACATTTCCTATCACACTACTCCTGTCTTTATACAGTCTTTTTACACCTTTCAGTTTTCTGTGAGCGTGTGCATGTGTGATCACATTGACATACTGCTACATACTTTACTCAGTGTGTTCATAATAAGGCAATGTGGTACCGAAAGGAACGGCTTCACTAAAATGTTTTGGTTATTGTCAATTAACAATGGGATAATAATAATGACCAtaagcatttgaatgtaaactgGCCATAAACCTCATTTAAAATCCTTGAAAAAGTAGGGGGTGGATTTTAAGCATTTGTCTTTTTCTGGACATCTCAATACAAGAGAATAGAAAACAAGAAAATCTGTTCAGTAACACCCGCAATccagttaaaataaaacatgaatttaaCATATGTACCTCTTCACAACGTTCGGGAAGGCAAGACGTTTGCTCTACCCTCTGCTTTTCTTAAGCTTGGCACAAGAGACTAGGATGAAGCTTCTGCACAGGCTTCACGGAGAGACTGTCAAGCGCAACAGTCTACCAGTTCAACACACTGCGCTGCCTGTGGCAGTGTGACTGATATCGCTGGTACATCAACATTAACCCAGTTCCCTGAGAACACTAAAGGACTAAAACCATGGCAGCACACAGGATATGCAAGATTATTTTTTGCTAGATAAAATGCGTACgataaaggaaaaacaaaacaagcagatGGTGAACATTAGATGGTGTTTTTTTGTGGACCGAGCATGTGGACAACAATCAAATAACTGTCACTTTCTTAATGTTGGTCATTGTTTtccaaaaacagctgatgaagcAACTAAAATAGGTCAtgatttttgttttcaattcaaCCTATTGCTGAGCGTGGAAATTAACAAATGGATACAAAGTGTAAACAAGGTACCATGGACAAATGCAGGTCTACTGACATAAAGTGACACAAATCGAGCATCTGCGAACAAAAATCTGATCCTGTGCAATTTACTGTCAACAGCCTATGTACCGGCTTCCCTTTTCGTCAGCAGCCTATGTACCGGCTTCCCTTTTCGTCAGCATTCATTGGTCCGTTTTTTCATCTGTACACATGTGAGGTTAGCTTTTTCGTTTTTTTTACtcttcttttgtgtgtgtttttgcactGATGTACCCATATCTAGGTGCTTGTTTTGGCTTTAAGCAAATGTAATGCTCGTGTGAGACTTTGTTGTACAATAAGGGTCTTTTCCTTGTTGGGTCGGTGTGTCTGTGCTGATCAGCTGACCAACTCCTTCACAGTTTGCTTCAGTTAATGCCTACAATGTCCAATAcccacatatattatatataaaaaataagttattgCGCATCCGAAAAAAGTGCATCTTATATTCAAAAATATCTCTTTCGCTCCATGCTTTCTTGTCTTCCTGTGGGTCCGGAAACCCAAAtccagcgttttttttttaagtgacaggGGTCATGAGTAGCTTGAAGGTGTGCCGGATGAGCACATAAGAAAATATGATAAGGTTGTGGAGTGAAAGTGAAGGAGGAGAAGAGAAAGGTTTGTCCAGCTACGCAATGACCATCGGGACGTCATCTGAAAAACCACTGATCATAGGAg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018944 True 1920 lncRNA 0.39 2 21520410 21542918

Neighbor

gene id symbol gene type direction distance location
XLOC_008467 NA coding upstream 24514 21323046 ~ 21495896 (+)
XLOC_008469 dre-let-7a-2 coding upstream 82451 21437876 ~ 21437959 (+)
XLOC_008468 dre-mir-100-1 coding upstream 82682 21437633 ~ 21437728 (+)
XLOC_008466 ubash3bb coding upstream 199772 21276735 ~ 21320638 (+)
XLOC_008465 gkup coding upstream 244727 21262917 ~ 21275683 (+)
XLOC_008471 si:dkey-40g16.5 coding downstream 129363 21672281 ~ 21673670 (+)
XLOC_008472 NA coding downstream 164865 21707783 ~ 21719970 (+)
XLOC_008473 ppp2r1bb coding downstream 201762 21744680 ~ 21772839 (+)
XLOC_008474 NA coding downstream 237680 21780598 ~ 21860417 (+)
XLOC_008475 si:dkey-103g5.3 coding downstream 319377 21862295 ~ 21872824 (+)
XLOC_008463 BX663520.1 misc upstream 268128 21252191 ~ 21252282 (+)
XLOC_008462 NA non-coding upstream 268853 21247526 ~ 21251557 (+)
XLOC_008461 NA non-coding upstream 274576 21240424 ~ 21245834 (+)
XLOC_008478 BX572077.3 non-coding downstream 460164 22003082 ~ 22003196 (+)
XLOC_008483 NA non-coding downstream 808447 22351365 ~ 22366522 (+)
XLOC_008485 CR848033.1 non-coding downstream 871206 22414124 ~ 22414253 (+)

Expression


Co-expression Network