XLOC_008466 (ubash3bb)


Basic Information

Item Value
gene id XLOC_008466
gene name ubash3bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21276735 ~ 21320638 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016951
GAGGAGGGACCGATTATGCGCGCATAACGTTAGTCATAGTGTAAATCGCTAAATAAGCAGATGTGGACGCGCCGTCTTCGACTGTCGTCGGTATCATTTGATGGGACTGAAGGATGGCAGCAAAGGAGGATCTTTACTCCAAGATTATTCCCCGCAGACTGAGGCAAAATAGTTGCGTCTCTGTCAAACATGGATCCAATCTGGACGTGCTGCTGTCGATGGGATTTCCTCAGCAGAGAGCGCTGAAAGCTCTGGCATCAACTGGAGGCAGAAGTGTCCAGCTTGCATGCGACTGGCTTTTCTCTCATTTGGATGACCCGTTCCTAGATGACTCTTTACCCAGAGAGTATGTGCTGTACCTGCGCCCCAGTGGACCTTTACAAAACCAGCTTTCTCATTTCTGGCAGCAGTCTCGCTTCACTTGTGGAAAGAACAAAGCTCACAACATATTTCCACACATCACGCTTTGCCAGTTCTTTATGTGTCCAGACAGTAAACTAGTGGCTCTGTGTGAAGCTCTGCAGTCTTCTGTGAATCAGTGGAGAGGACGTTTCCCCAGCCCTTTGCCTCTGGAGCTCTACACCTCCACCAACTTCATCGGCCTGTTCGTGGAGGAGCAGGTGGCAGAGACGCTTAAGCAGTTTGCCGCGGACTTCGCGGTGGAGGCTGCTGCTAAAGTGGATGTCCATGTGGAACCCCATAAAAAACAGCTTCATTTAACTCTGGCCTATCACTTCCCAACCAATCATTATCACTCCTTGGAAAAGTTGGCAAAAGGAATTGAGGTCAAATTGGGTTGCGATTGGCTTGCTGCCCTCTTCTCTCGGGATATACGATTTGCCAATCATGAGACGTTGCGAGTGATGTACCCCTACACTCCTCAGAACGATGATGAGCTGGAACTGGTGCCCGGAGACTATATATTTTCATCCACATTGGAGCAAATGAGCACTAGTGAGGGCTGGGTGTACGGCACGTCTCTGGGTACTGGCATCTCTGGACTGCTGCCTGAAAACTATGTGAGCCCGGCTGATGAGTCGGACACCTGGGTCTTCCATGGATCACACTCCTTCTTCTGTACATCTCCATCAGAAAAGGGTTGCAAAGAGACCAAAGCATTAGATGGGCTGCTCAACATTCGATGCTTTGAAAACTCCAGGCTGGGAGAGTCTGCCATTTTGAGTGTCATTTGCCAACCTATGCAgGTCCTTCGCTCTAACATCCAGTCTCGAGCTCCTAAAAGGACCCTGTTTGTATGTCGGCATGGAGAGAGAATGGATGTTGTTTTTGGGAAACACTGGCTCTCTCAGTGTTCTGACTCAAAAGGCAGGTACGTGAGGAGGAACCTGAATATGCCTGCAGCTCTGCCTGCTCGGGGTGCAACACATAGGGACTACGAAATGGATGCTCCTATAACTGTGGTTGGATCCACACAGGCTAAGATAGTGGGGGAGGCTCTGCTGGAAAGTAATACCAGTATTGATTttgtatattgttcacccagcCTTCGGTGTGTCCAGACGGCTCATGAAATTCTCAGAGGAATGCAGCAAGAAGGCAGACTAAGCATTCGAGTGGAGCCTGGGCTGTTTGAGTGGACTAAATGGGTGTCAGGAACATCTTTGCCTGCTTGGATACCCCCTACAGATCTTGCTGCAGCCAATCTTAATGTGGACACAACTTACAGACCTCACATGCCCATCAGCAAACTAACTGTCTCCGAGGCGTATGAAACATACATTAGTCGCAGCAACCAGGTGACCAAAGACATTTTGGCCTACTGCAAAAATAAGGGTAAAAATATTCTGTTTGTGGGACATGCTTCCTCTTTGGAGGCCTGCACTCGCCAACTCCAGGGTCTTTCTTCACAGAATTCTAAAGACTTTGTGCAAGTAGTCCGTAAGATTCCATACCTGGGTTTGTGTGCCTGTGAGGAGCAAGGGGACTCAGGAATCTGGCAGCTTGTGGATCCACCAATTCTTCCCTTGACTCATGGGCCGAACCACAGCTTCagctggagagaaaccttacagcaagaatgagCGCATCTGCAGTGTCCAAAAGAGACTGAAATGTTACCTGCACAGGAAGCACACAACTGAGAGAATATTTCTGTCACATTCATGTTTGAGTTATGCAAATAATATATTGATACAAGATGTGGcagattttttgtttgcaaacGGCACTGAATAATGAACATTTGTGGTAGTGTTTACTGAGCCTTTAAAGAGGCTTTCTCAGGGCAT

Function

symbol description
ubash3bb Orthologous to several human genes including UBASH3B (ubiquitin associated and SH3 domain containing B).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080724-6 Orthologous to several human genes including UBASH3B (ubiquitin associated and SH3 domain containing B).

Ensembl:

ensembl_id ENSDARG00000077399

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016951 True 2249 mRNA 0.48 14 21276735 21320638

Neighbor

gene id symbol gene type direction distance location
XLOC_008465 gkup coding upstream 1052 21262917 ~ 21275683 (+)
XLOC_008464 usf1 coding upstream 14168 21252532 ~ 21262567 (+)
XLOC_008462 NA coding upstream 25178 21247526 ~ 21251557 (+)
XLOC_008461 NA coding upstream 30901 21240424 ~ 21245834 (+)
XLOC_008460 si:dkey-52d15.2 coding upstream 72264 21202820 ~ 21204471 (+)
XLOC_008467 NA coding downstream 2408 21323046 ~ 21495896 (+)
XLOC_008468 dre-mir-100-1 coding downstream 116995 21437633 ~ 21437728 (+)
XLOC_008469 dre-let-7a-2 coding downstream 117238 21437876 ~ 21437959 (+)
XLOC_008470 NA coding downstream 199772 21520410 ~ 21542918 (+)
XLOC_008471 si:dkey-40g16.5 coding downstream 351643 21672281 ~ 21673670 (+)
XLOC_008463 BX663520.1 misc upstream 24453 21252191 ~ 21252282 (+)
XLOC_008459 CR626907.3 non-coding upstream 78449 21180094 ~ 21198286 (+)
XLOC_008458 CR626907.1 non-coding upstream 99686 21167142 ~ 21177049 (+)
XLOC_008457 NA non-coding upstream 112162 21164035 ~ 21164573 (+)
XLOC_008472 NA non-coding downstream 387145 21707783 ~ 21719970 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_04577347_04600719 UBASH3BB coding CI01000072 null 4577049 ~ 4600719 (-)