XLOC_008468 (dre-mir-100-1)


Basic Information

Item Value
gene id XLOC_008468
gene name dre-mir-100-1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21437633 ~ 21437728 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016953
GAAGAGACCTGCCTGCTGACACAAACCCGTAGATCCGAACTTGTGGTGACTGTCCACACAAGCTTGTATCTATAGGTATCTGTCTGTGTGGCCTTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000081501

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016953 True 96 miRNA 0.50 1 21437633 21437728

Neighbor

gene id symbol gene type direction distance location
XLOC_008466 ubash3bb coding upstream 116995 21276735 ~ 21320638 (+)
XLOC_008465 gkup coding upstream 161950 21262917 ~ 21275683 (+)
XLOC_008464 usf1 coding upstream 175066 21252532 ~ 21262567 (+)
XLOC_008462 NA coding upstream 186076 21247526 ~ 21251557 (+)
XLOC_008461 NA coding upstream 191799 21240424 ~ 21245834 (+)
XLOC_008469 dre-let-7a-2 coding downstream 148 21437876 ~ 21437959 (+)
XLOC_008470 NA coding downstream 82682 21520410 ~ 21542918 (+)
XLOC_008471 si:dkey-40g16.5 coding downstream 234553 21672281 ~ 21673670 (+)
XLOC_008472 NA coding downstream 270055 21707783 ~ 21719970 (+)
XLOC_008473 ppp2r1bb coding downstream 306952 21744680 ~ 21772839 (+)
XLOC_008463 BX663520.1 misc upstream 185351 21252191 ~ 21252282 (+)
XLOC_008459 CR626907.3 non-coding upstream 239347 21180094 ~ 21198286 (+)
XLOC_008458 CR626907.1 non-coding upstream 260584 21167142 ~ 21177049 (+)
XLOC_008457 NA non-coding upstream 273060 21164035 ~ 21164573 (+)
XLOC_008474 NA non-coding downstream 342870 21780598 ~ 21860417 (+)
XLOC_008478 BX572077.3 non-coding downstream 565354 22003082 ~ 22003196 (+)

Expression


Co-expression Network