XLOC_008459 (CR626907.3)


Basic Information

Item Value
gene id XLOC_008459
gene name CR626907.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21180094 ~ 21198286 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016935
CTGGACACTCGTCATCATGGCTCTGAATGTTAGCTGTTGTTGGAAAGGGCTCCTCCTGAACTTTTTCCTCTTCGTCTGCGTCCAAGGACAAGCAGCAGAGCCATCTTTCATGGTGACTTTTCCTGCCGTGATTGAGTCAGGATCTGAGGCCAAACTGTGTGCAAGTCTTCTGAAGCCCAATGAAAGTCTCGTCATGAACATATATCTGGTTCATGGGAACCAGAGCACATTACTGCTGCAGGAGAATGCTGAGCAAGAGTTTCACCGCTGCTTTAACTTCAAGGCCCCTCTAGCAGAAGCAGAATCAGTGCAGAAAATCAAGGTTGAACTTCAGGGAGAGTCCTTCAAGATGACTGAGGAAAGATAAGTCATGTTCAAATCTTACGATCCTCTGACCTTTATCCAGACTGATAAACCCATCTATATGCCTGGACAGATTGTGAACTTCAGAGTTGTTACCATGGATACAAACTTTGCACCAGTTGATCAGCAGTACAGTATTATCGTGCTTGAGGACAGTCGTACTAACAGGATTGGTCAATGGACAAATGTTTCCTCAACAAGGTGGATTTTGCAGCGCTCATATGAATTAAACCCAGAATGTCGTGAAGGCGCATACAAACTAAAGGCTTTTATTGGAGAAAGGATGATCTTACATGATTTTCAGGTGAAAAAATACGTTTTGCCTAAGTTCGaagtaacattaaaaaaaccAAAGACAGTGAGTGTTGTTGAGGAGGAACTGTTAATTGAGGTTTGCGCAAAATACACTTATGGACAACCTGTGCCTGGTAAATCATGGGTAAAAGTGTGCCGTGATCCTTTGccctacatttttttctttccattgtGTTTAGGGGAAACCCTTGAGATAACAAAGACTGGCTGTGCCATCCATAACTTTGGTTTATCAATGATATTGAACTCCACACTAAAGAATAACTTAAAGGATTCTCTTCATGTTGAGGCAGTGGTTACAGAAGAAGGAACAGAGATCACCAGGACAAAATCTGAATCTGTACATCTCACTTATGAAATTGGCAAAGCCACACTTATTGACCTGCCCAAAACATATGAACATGGATCAGTCATAAAAGGAAAAATCAAACTTTTCGATTTTAAAGATGCGCCAATTCCAAACAAAGAGGTTTATCTTTTAGAGGGTGAAAACTGGTCCTCCAAACTGCTCCTAAATCTCACTACAGACAGTGATGGACTGGCCAGCTTCTCTCTTAATACATCTAGTCTTTCTAAAAAAGACATTTCTCTGATTGCAAGTGTGTATCCAGATACCCGTTATTATGGCTACAAAACACCTTACTTCTCTACAGATAAAAAAACAGTTCAACTCTTCCAGATCGCCACTGCGTACTCCCCAACATTAAGTGAACTGATTATAGAAGATATTGAGCAGCCGATAAAGTGTGGCACTGAGATTACAGCCACTGTGAAGTATTATTTTGTTGGCGAGACTGTTGAAGACTTCAGTACTGACATTGTCTATATGGTCTTGTCCAGAGGAGTGATCGTTCATCATGGATTTGAGAAGGTTGAAGTGAAGTCTTCTTCTAATGGAGTAGCAAGTGGCACAATGTCCTTCAAACTGTCTGTTGGTGCAGATTTGGCTCCTGTAGTGCAGATTCTGGCATACTGTGTTCTGCCCAGTGAAAATGTTATTGCTGCTAACAAAACATTagacactgaaaaatgttttggtaataaGGTGTCTCTGCAGTTTTCTCCTGCTAAAGCAGTTCCTGGTGAGAAAAACACTCTCCAGCTCTCAGCTCAGCCTGGTTCACTGTGTGGCCTCAGTGCTGTAGATCAGAGCGTCCTGATCCTGGAGTCAGGAAAACGTCTGGATGCTGACAAGATTTTCAACCTGCTACCAGTTCATTCGGTGTCAGAGTATCCTTACAGTGTTGAAGATGGGCAGGCATGTCTGTATATAAGACCTCGTCGATCTGTGCTGACAGACAACACCTATGAAACCTTAAAGAGTGTGGGGCTGAAAATGGCAACAAATTTGGCTGTGCGAGTCCCTGAGTGTCTGTTATACAGAGGCTTGACTTATCACAAAAATTTAGTGATGTATCGTCAGTATGCTCCAGCACCCGGGATGTTTGCTCAAGGAATGGCTGGTGTTGATGGACTGGTTGGAAATTCTCCATCAGTGACAATTAGGACAGTCTTTCCAGAAACATGGATCTGGGAGCTTGCTGAAGTGGGagactctGGATCAGCTGAGGTTCCTGTCAAAGTTCCTGACACCATCACCACTTGGGAAACAGAGGCCTTCTGTCTGTCCTCCACAGGTCTGGGCTTGGCTCCTCCTGCTCAACTGACAGTTTTCCAGCCCTTCTTCCTGGAGCTCTCTCTGCCTTACTCCATCATCCGTGGGGAGATCTTTGAGCTCAAGGCCACTGTTTTCAATTATCTGTCCAAGTGCATCATGATTAAAGTGAGTCCAGCTCCTTCCTCAGACTACTCTCTCAAAGCCTCCTCTGATGATCAGTATTCATCCTGTCTCTGTGCTAATGGAAGAAAAACCTTTAAATGGATCCTCACTCCTTCTGTTCTTGGAGTGGTAAATGTTACAGTTAGTGCAGAGGCAGAGGCGTCCCAGACTGTGTGTGACAATGAGATTGTGAGTGTGCCAGAGAGAGGACGCATTGACATCGTCACACGAAGTCTGCTTGTACAGGCTGAAGGAATTGAAAAGACAGAGACCAACAGCTGGTTATTGTGTCCAAAGGGTGACAGTCTCTCAGAGAAAGTGGATCTTACTCTGCCTAAAGATGTGATAGATGGATCAGCAAAATCCTCAGTTTCAGTCATTGGAGACATATTGGGTCGTGTACTGCAGAATCTTCATGGATTATTACGGATGCTGTACGGCTGTGGAGAACAAAACATGGCTGTTCTTTCTCCCAATATTTACATTCTGCAGTATCTGGAGAACACAAAGCAGCTCACATCAGCCATCCGAGAGAAAGCCAGCAGCTTCCTTAAGAGTGGATACCAGAGACAACTGAACTACAAGCATTTTGATGGGGCTTACAGCACATTTGGTTATGGTGATGGAAACACATGGTTGACTGCCTTTGTCCTGAGGTCTTTTGGCAAAGCTCAGAAATACACATTTATTGATCCACAAATTATTCAGAGTGCAAAGGATTGGTTAATAAGCAGACGGGATTCAGACGGCTGTTTTATCCAACAGGGAAGACTGTTTAACAACAGAATGAagGGTGGAGTGAATGATAATGTGACCATGACGGCCTACATTACTGCATCACTGCTTGAACTGGAAACTCCAGTCACAGATCCTGTCATCACTAAAGGTTTGTCATGCTTGAGGTCCGTCATCGAGGAAGTCAAAAACACTTACACCACTGCTCTGCTGGCCTACACTTTCAGTCTGGCTAGAGACACCAACACTCGAAAGCAGCTTTTCAGCAAACTGGAGGATCTTGCTATTTCAGATGGTCCTCTTGTCCACTGGTCTCAGTCTGCATCTGCTGATGACTCTGCTTCTCTGGATGTGGAGATCAGCTCATATGTGCTGCTAGCTGTTCTCACTGCAGATTCACTCACTACAGCTGATTTGGGCTTTGCTAACAGGATTGTCAGCTGGCTTGTGAAGCAGCAGAATGCCTATGGAGGATTCTCCTCCACACAGGACACAGTGGTGGCTCTTCAGGCTCTGTCTTTGTACGCCACCAAAGTGTTCAGCTCTGACGGCTCCAGCACAGTGACTACAGTCAGCAGGAGACTCTCACCACTTTGATGTCAATCAGGACAACAAGTTACTGTACCAGGAGAAGCAGCTGGCCAATGTGCCGGGCAAATACAGCATTGAAGTCAAGGGCTCAGCCTGTGTGTCTGTGCAGATAGCTCAGTTTTACAACATTCCCACTCCTACTGAAGCTAAAACATTGAGCATTGATGCTAAGATTGAAGGAGATTGTGAAGCACTGGGACAAAATTTCATCTTCGACTTCACTGTCAAATACGATGGGCCAGAGGAAAAGACTAACATGGCCATTGTAGACATTAAACTGTTATCTGGATTCACAGCTGATACATCTGCGCTTGGCACTTCTTCAGGAACATATGTATCACTTGTGGAGCGGGTCGATTCCAAAGATGACCATGTCATTGTGTATCTGAAGGAGATCTATAAAAATGTTGCAATGAATTACCAGATACAAATGAAACAGGTTCTACCAGTTAAGAATCTCAAGCCAGCTGTGGTCAAAGTGTATGATTACTACCAAACAAGTGATCAATCAGAGATTGAATACTCCTTCCACTGTGAAGCACTGAAGAACatcaattaatatttttcagtggtgaaacatgtttaagcatttatttgtttaatattaaatagtttttctaTATTCTGGGCAAATTAATTCCCACCTATCAACCCAACCCATCATATCTTaagaaactgatttattaaatcacacacatacaaaaaatattACATCATGATTTAACATGATTATTAAAAGTGTTGAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097504

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016935 True 4531 unprocessed_pseudogene 0.43 34 21180094 21198286

Neighbor

gene id symbol gene type direction distance location
XLOC_008458 CR626907.1 coding upstream 3045 21167142 ~ 21177049 (+)
XLOC_008457 NA coding upstream 15521 21164035 ~ 21164573 (+)
XLOC_008455 NA coding upstream 86478 21004733 ~ 21093616 (+)
XLOC_008456 NA coding upstream 142316 21017649 ~ 21037778 (+)
XLOC_008454 CR848784.1 coding upstream 278739 20897103 ~ 20901355 (+)
XLOC_008460 si:dkey-52d15.2 coding downstream 4534 21202820 ~ 21204471 (+)
XLOC_008461 NA coding downstream 42138 21240424 ~ 21245834 (+)
XLOC_008462 NA coding downstream 49240 21247526 ~ 21251557 (+)
XLOC_008464 usf1 coding downstream 54246 21252532 ~ 21262567 (+)
XLOC_008465 gkup coding downstream 64631 21262917 ~ 21275683 (+)
XLOC_008463 BX663520.1 misc downstream 53905 21252191 ~ 21252282 (+)
XLOC_008467 NA non-coding downstream 124760 21323046 ~ 21495896 (+)
XLOC_008468 dre-mir-100-1 non-coding downstream 239347 21437633 ~ 21437728 (+)
XLOC_008469 dre-let-7a-2 non-coding downstream 239590 21437876 ~ 21437959 (+)

Expression


Co-expression Network