XLOC_008486 (tlcd5a)


Basic Information

Item Value
gene id XLOC_008486
gene name tlcd5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22435460 ~ 22444746 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016980
GTCCAGACGCTGAGAGACTGACTGAAATGTGGCTTTTGTTTGTGTGGTGATTTGCGTACCATCTCCAAGACGATGCCGGAGCAGAGCGCTGAGATCCCCGAAGGCTTCGTGTCTTCTCGGCTGCTGCTCCTCTGGACGTGATGCTCAGGCGGAGGAACATCCAGCATCCACGCCGAGCAGCACTTACTTTCTCCCCGGCCTGCCACTGAACATGCCTGCAGCTTGAAGAGCTCCACAGAATAAAGATGTCGCCGCTGGTGCTGGGAGTCGGAGTGTGTTTAGCCGGCTGGATTGCTCTTTATGCTTTGCTGTGCTACACTAATGGCTCTTGTGGCTATGAATGGAACTGTCGGCTTGTTACACTATTCCATGGCATCCTTGCAGTCTGTATAACTGCTTACATTGGGTACATCGATGGACCGTGGCCTTTCACCTACCCAGGTACCAAAAACACCCCTCTGCAGATCAGCGCTTTGGTGGTCAGTCTGGGCTACTTCATCTTTGACATGGCCTGGTGTGTTTACTTCCGCACAGAGGGCCTGGTGATGCTTGCCCACCACACCATGAGCATTCTGGGTATCCTGCTCACCCTGTGGCTGGAGGAGTCAGGCATCGAGTCTTGCGCCGTTCTATTCGGCAGCGAGATCACCAACCCCCTGCTCCAGACGCGCTGGTTTTTAAAACACTCTGGCCGATACGATTCTATCCTCGGAGATGTGGTAGACATCCTGTTCGTAGCACTCTTTGTGTTCATGCGCATTTTCGTCGGCGGTGCCATGTTGTACTGTGAGCTGATCTCTCCGAGGCCTAAGTTCATTATTAAGTGTGGCGGAGTGGCCATGTATGCGCTATCCTGGGTGTTCATGGCTGATATTGTACGCTTTACATATCGTAAATATCAGGTCTGGATGAATCGGCACAAGATGATGGCAGAGGTCAATGGGCTGAACGTGAAGAGAGATTGAAATGCATCTCTCAGATATGAGCCTTTTGTTTTGAACACTGGAGAGAAGAATGAGAGTTAGTGAACCAGCTAATAACGCTCTACAGCTAAtagatgtttacatatttttttgaAAAGGATATCAGCcattaatgttcatttctggttgGTGATAAACACACAGCTCTGATGTGTCTTTTTTATGATTTGAAGTTACGGTTTAACACGATATTCTTACAATCAAATCTAATTTCATATACTGTGTTTGTACTCATAAGGATTGAAGTGTTTTAAGTACTggatatatttgatattttttgtatttaggaACAGTACTTGTGATAAATTTTAATTAGTAACGTTGCCtttacatttttgctttttttattaaaggggacctattatgcaaagaTTTATTATAAATGGGTTTTAAACATCTACCTTGTGAGGATATAGCcaacttctaatggtaaaaatcaaTCCATACTTATTTCATCACACTTTATAAGAAACACGTTGACTGTTTATATCATTGGTGGAAAATCCTGTCAATTAGTTACGATCTTTTCCCTGTTAGCATAAACTCAGCCCTGAGTGGGCCATGTCCACACATAAATGGATGTTTTTATGAATGAAGATTTCCCTGCtttcgtttttaaaaaaaatctctgtccACATGAAAACGCAAAAAAGTGATGGGCATGCCAACAGGTGGCGATAGTGACACTTTTATACTGGAGTTTACACTAAATGGAGAATTAAGTATATTTTGTGGGTAAATTGCGTTCAAGTCAatagctgtttctcaattccaagaacggaGCCGCGTTCTTGCTAGGTCACCTTGGAAGAACAAATTCTGAAGTCTGCAAGAACAGAgtgcgtcctgtgagaaatgagatgctgtgttcttactgatggtcacatgaccttcacacgtttttaatagacaattatttaaacataacagcATTCacacaacaatttattgtttttatgctTTTCAATATATATACAACATGCACAAAAAAAGGAACTTATATATtccacaatacaaataaaatattttaaaatgcatttcagcaaataaacacccttaatgtgtttatgcctttgccaagattttcatggtaatgtttactttcaccatctcATTTAGGCAAACTCCTGAGATAattaagttatatctctgaactttaacaataaaaatgctgcccttcccacctcctttatacagccgcaatgacttctgggactttatGAGCAAAGTCTGCATCGATGCATCCCCGATAGAACACATCCAGAAACTTTCACGCGTCCTCGGTTCTTGCAGCCCTTAGTTCTGGAACTAAACTTGAGCAGTTGATGATAACGTTACACAAGGACGCAAAaatgctgaagaacgcatattgagaaatgTCTAATGCAAACTGGAGAAATGAGGTAGATTACCATTCTCTGGTTAAACAATGCAGAATGCGTGATACGTTTGCTTTGTGCAGAATTTGCCTCATTCACGTCTTCTGTTTGGTGTGAGCCCAGCCATTTTGGCCAATCTAGAAGTAGAAAACAGCGTGCATGCTGACGTCATGAGGCGAAAACTCCTTAACATCCACACAACACACTGTACCTGGATTTTTGAAAAATGTGgaattattaatcattcttactgttcagtgaatgcaaactgccgtagattattaaagacgcaaaccccttactgcacgacagctgtgcCTTCAACAAACcagattgtttatgagcgtcaaaagtcgCTGATCTGTTTGGCTATTTGACTGCGtatcactgcatatcaaatgacttaaacgatataactagagaaatctccactgtgagCGAGAGCGGCTACTGACCAGCgcagcatcaatgatgtaagctTGCCGAGGCCAAATGTAATGCgagtgtgggccgtcgggggagacaggaggggcgacaagcatgctttggcccggttcaaggcaactgtacataataGTCACCTGACAATGCGTTTTCGTGTGGACAACAGTGCACCACAAAGAAAAAGTGCAGCTTTGAAAATACCCttgtttgtgtggacaaggcctcagAAGTAGCACTGACATTCTTCTTATAAGAAGGCCCGGGAGCACAATCTCATAAGAATTTAAAGCCACACCCCCCAAAACGGCATGTTTTGAATCGATCCCCAAAAGTGGCAACTTCATAGAACTATAAAACTTTATCTGcagagtattttgagctgaaacttcattcaCCCACTCCAGGGTCATCAgagatttatttgacatttttctaaAAAGCAGCATAATGGGACCCCTTTAAACTTTAAGTATGTGCAATATGCAGTAAGGATTATCAAACACTACTAAATGTTTCTGGAGGATTACTGAATGATTTTTGTGTGAAAAAGTAAACCCAGAAATCTTTATGTGTTTGGagattttaactatttttaaaaagggaaatTGGGTGATGACTTACAAACTGTCCATCTGTCATGGTGAATTGACCACACCAGTTGATAAAATCTGTAAACATTGTCATACATTTCATAAATTAGATTGAAGTGTTATAGGGCGTTGTCACACCTCAGATTAAACATAACTATGTTACAatggtgtgtgtaaatgtatcatTTATGTGTTCAAGAGATTTTCTAAgcattagaataaaataaaagtaatacat

Function

symbol description
tlcd5a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in mesoderm; somite; and tail bud. Orthologous to human TLCD5 (TLC domain containing 5).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-000607-58 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in mesoderm; somite; and tail bud. Orthologous to human TLCD5 (TLC domain containing 5).

Ensembl:

ensembl_id ENSDARG00000024920

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016980 True 3634 mRNA 0.41 3 22435460 22444746

Neighbor

gene id symbol gene type direction distance location
XLOC_008484 oafa coding upstream 3875 22390076 ~ 22431585 (+)
XLOC_008485 CR848033.1 coding upstream 21207 22414124 ~ 22414253 (+)
XLOC_008483 NA coding upstream 68938 22351365 ~ 22366522 (+)
XLOC_008482 pde9al coding upstream 86834 22333778 ~ 22348626 (+)
XLOC_008481 hepacama coding upstream 109487 22311803 ~ 22325973 (+)
XLOC_008487 arhgef12a coding downstream 3710 22448456 ~ 22538843 (+)
XLOC_008488 NA coding downstream 96598 22541344 ~ 22561137 (+)
XLOC_008489 grik4 coding downstream 277936 22722682 ~ 23188894 (+)
XLOC_008490 NA coding downstream 762413 23207159 ~ 23207464 (+)
XLOC_008491 cbl coding downstream 763296 23208042 ~ 23265405 (+)
XLOC_008463 BX663520.1 misc upstream 1183178 21252191 ~ 21252282 (+)
XLOC_008478 BX572077.3 non-coding upstream 432264 22003082 ~ 22003196 (+)
XLOC_008474 NA non-coding upstream 575043 21780598 ~ 21860417 (+)
XLOC_008472 NA non-coding upstream 715490 21707783 ~ 21719970 (+)
XLOC_008492 NA non-coding downstream 821912 23266658 ~ 23268377 (+)
XLOC_008494 CR847979.1 non-coding downstream 933325 23378071 ~ 23378188 (+)
XLOC_008496 NA non-coding downstream 1023238 23467984 ~ 23505657 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_03898250_03900844 TMEM136A, TMEM136 coding CI01000072 null 3898165 ~ 3900844 (-)
bowfin (Amia calva) AMCG00004525 NA coding CM030121.1 CM030121.1 52726785 ~ 52733805 (-)