XLOC_008482 (pde9al)


Basic Information

Item Value
gene id XLOC_008482
gene name pde9al
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22333778 ~ 22348626 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016976
CTTGCTCTCTCTTCAGCTCCATTGAGCACCTGGGACGGCTGGGAGAAACCGGGAGCTGCTGACGGCACACAGGTATTTATTTCAGAAGACATTTGGCTGGTGGGACATTTGAGGGCTGGTTTTGGTGGATCTGCTCCTGGTTAAGAGTACAGGTGGATCTCACAGTTCATTTCATCAACATGGGGTCTGCCTCCTCCTCTTACTCTCCCAAAACCATCTATTTGGATGTAGACGGCAAAGTGCAGAAGGTGCTTTTCAGCCGTCACTGCAGCCCATGTGATATTAAAGAACTGCTGTGTTCCTCCTCCAACATCCCCAGGAACACTGCAATAATGATGACAGACCCTGAAGGTGCCATCGTATCCATTGATCCCACCATGCCCACCAACAACCCCAACTTCCTGTATAAAATCATTCCCTTGTCTGCCAGCCAACTGGGAGAAAAGGAAGACATGTTTCAGAATGTGCTCTCACAGGTAGCAGAGCAGTTCAGCAGAGCATTTAGGATCAACGAGCTGAAAACGGAAGTGACCAACAGACTGGCTATGCTGGAGAAGAGAGTAGAACTGGAGGGGTTAAAGGTCGTAGAGATTGAAAAGTGCAAAAATGACATGAGGAAACTACGAGATGAGATGACATCTAGAGCAGGAGCAAGAGTGAATTGTCCATGTAAATACAACTTCTCCGACGACGGGAAGAAATTAACTCCCAGACGTGACATCCCCAGCTACCCAAAGTACACACTTTCTCAGGAGACCATTGAAGCGCTGAAGAAACCAACCTTTGATGTTTGGCACTGGGAGCACAATGAAATGCTGAGCTGCCTGGAGTACATGTACCACGACTTAGGACTCGTGAAGGAGTTTAACATAAACCCGATTACTCTCAAACGCTGGCTGCTGGGCATTCAGGAAAATTACCGAAGCAACCCGTTCCATAATTTCCGTCATTGTTTTTGCGTGAGTCAGATGATGTATGGCATGATCCACCTCTGCAACCTCCAGGAAAAGCTCACCCTGACAGATCTGGGCATTTTAATGACTGCTGCTGTGTGTCACGACTTGGACCACCCTGGATACAACAACACGTACCAGATCAATGCCCGCACTGAGTTGGCGGTGCGCTATAATGACATCTCGCCTCTGGAGAATCACCACTGCGCTGTAGCCTTCCAGATACTCTCTCTGCCAGAGTGTAATATATTTGCCAATGTGGAGCCGGAGGCCTTCAAACAGATTCGGCAGGCAATCATCACGCTGATTCTGGCCACAGACATGGCCCGACATGGTGAGATTCTGGACTCGTTCAAGCACAAAGTGGACCATTTTGACTTCACCAATGAGGAACATGTGGCTTGCCTGAAGATGGTCCTTATCAAATGCTGTGACATTTCCAATGAAGTGCGGCCGACGGAGGTGGCCGAGCCGTGGGTGGACTGTCTGCTGGAGGAATACTTCATGCAGAGCGATAGAGAGAAATCTGAGGGGCTTCCTGTTGCTGCCTTCATGGACAGAGAGAAAGTCACTAAGCCCACAGCACAGATCGGCTTCATTAAATTTGTCCTCATCCCTATGTTTGAAACGGTCATGAAGCTCTTTCCTCAGATTGAAGAGATTATGGTGCAGCCTCTCAGAGATTCGCGTGACCACTATGAGGAGCTGAAGCAAATCGATGATGCCATGACCGAGgcacagaagaaaaaaacagaaagccTGTCATTAGGAGGGAAAAAGAAATAAGCACTGCTATGAGCATAAAAGT

Function

symbol description
pde9al Predicted to enable 3',5'-cyclic-nucleotide phosphodiesterase activity and metal ion binding activity. Predicted to act upstream of or within signal transduction. Orthologous to human PDE9A (phosphodiesterase 9A).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-807 Predicted to enable 3',5'-cyclic-nucleotide phosphodiesterase activity and metal ion binding activity. Predicted to act upstream of or within signal transduction. Orthologous to human PDE9A (phosphodiesterase 9A).

Ensembl:

ensembl_id ENSDARG00000076650

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016976 True 1761 mRNA 0.48 19 22333778 22348626

Neighbor

gene id symbol gene type direction distance location
XLOC_008481 hepacama coding upstream 7805 22311803 ~ 22325973 (+)
XLOC_008480 spa17 coding upstream 46860 22267847 ~ 22286918 (+)
XLOC_008479 ankk1 coding upstream 308824 22014029 ~ 22024954 (+)
XLOC_008478 BX572077.3 coding upstream 330582 22003082 ~ 22003196 (+)
XLOC_008477 ttc12 coding upstream 352232 21947117 ~ 21981546 (+)
XLOC_008483 NA coding downstream 2739 22351365 ~ 22366522 (+)
XLOC_008484 oafa coding downstream 41450 22390076 ~ 22431585 (+)
XLOC_008485 CR848033.1 coding downstream 65498 22414124 ~ 22414253 (+)
XLOC_008486 tlcd5a coding downstream 86834 22435460 ~ 22444746 (+)
XLOC_008487 arhgef12a coding downstream 99830 22448456 ~ 22538843 (+)
XLOC_008463 BX663520.1 misc upstream 1081496 21252191 ~ 21252282 (+)
XLOC_008474 NA non-coding upstream 473361 21780598 ~ 21860417 (+)
XLOC_008472 NA non-coding upstream 613808 21707783 ~ 21719970 (+)
XLOC_008470 NA non-coding upstream 790860 21520410 ~ 21542918 (+)
XLOC_008469 dre-let-7a-2 non-coding upstream 895819 21437876 ~ 21437959 (+)
XLOC_008488 NA non-coding downstream 192718 22541344 ~ 22561137 (+)
XLOC_008490 NA non-coding downstream 858533 23207159 ~ 23207464 (+)
XLOC_008492 NA non-coding downstream 918032 23266658 ~ 23268377 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_03941680_03952617 PDE9A, PDE9AL coding CI01000072 null 3941331 ~ 3952617 (-)