Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00018947 |
| length | 618 |
| lncRNA type | antisense_over |
| GC content | 0.46 |
| exon number | 2 |
| gene id | XLOC_008474 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 21780598 ~ 21860417 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000291 | nuclear-transcribed mRNA catabolic process, exonucleolytic | biological_process |
| GO:0034427 | nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | biological_process |
| GO:0016075 | rRNA catabolic process | biological_process |
| GO:0071025 | RNA surveillance | biological_process |
| GO:0071027 | nuclear RNA surveillance | biological_process |
| GO:0016078 | tRNA catabolic process | biological_process |
| GO:0071028 | nuclear mRNA surveillance | biological_process |
| GO:0071029 | nuclear ncRNA surveillance | biological_process |
| GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | biological_process |
| GO:0071038 | nuclear polyadenylation-dependent tRNA catabolic process | biological_process |
| GO:0071042 | nuclear polyadenylation-dependent mRNA catabolic process | biological_process |
| GO:0071046 | nuclear polyadenylation-dependent ncRNA catabolic process | biological_process |
| GO:0071047 | polyadenylation-dependent mRNA catabolic process | biological_process |
| GO:0034472 | snRNA 3'-end processing | biological_process |
| GO:0034473 | U1 snRNA 3'-end processing | biological_process |
| GO:0034475 | U4 snRNA 3'-end processing | biological_process |
| GO:0034476 | U5 snRNA 3'-end processing | biological_process |
| GO:0043633 | polyadenylation-dependent RNA catabolic process | biological_process |
| GO:0043634 | polyadenylation-dependent ncRNA catabolic process | biological_process |
| GO:0043928 | exonucleolytic catabolism of deadenylated mRNA | biological_process |
| GO:0000459 | exonucleolytic trimming involved in rRNA processing | biological_process |
| GO:0000460 | maturation of 5.8S rRNA | biological_process |
| GO:0000466 | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0031125 | rRNA 3'-end processing | biological_process |
| GO:0090503 | RNA phosphodiester bond hydrolysis, exonucleolytic | biological_process |
| GO:1905354 | exoribonuclease complex | cellular_component |
| GO:0000176 | nuclear exosome (RNase complex) | cellular_component |
| GO:0000177 | cytoplasmic exosome (RNase complex) | cellular_component |
| GO:0000178 | exosome (RNase complex) | cellular_component |
| GO:1902494 | catalytic complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00016958 | lncRNA | upstream | 65035 | 21707783 ~ 21715665 (+) | False | XLOC_008472 |
| TCONS_00018774 | lncRNA | upstream | 107030 | 21672281 ~ 21673670 (+) | False | XLOC_008471 |
| TCONS_00018944 | lncRNA | upstream | 237782 | 21520410 ~ 21542918 (+) | True | XLOC_008470 |
| TCONS_00018942 | lncRNA | upstream | 284804 | 21446241 ~ 21495896 (+) | False | XLOC_008467 |
| TCONS_00016971 | lncRNA | downstream | 120214 | 21950231 ~ 21952715 (+) | True | XLOC_008477 |
| TCONS_00018949 | lncRNA | downstream | 521348 | 22351365 ~ 22366522 (+) | False | XLOC_008483 |
| TCONS_00018950 | lncRNA | downstream | 523008 | 22353025 ~ 22366522 (+) | True | XLOC_008483 |
| TCONS_00018951 | lncRNA | downstream | 711327 | 22541344 ~ 22551028 (+) | False | XLOC_008488 |
| TCONS_00018952 | lncRNA | downstream | 711347 | 22541364 ~ 22558972 (+) | False | XLOC_008488 |
| TCONS_00016963 | mRNA | upstream | 7861 | 21744680 ~ 21772839 (+) | False | XLOC_008473 |
| TCONS_00016962 | mRNA | upstream | 60730 | 21712328 ~ 21719970 (+) | True | XLOC_008472 |
| TCONS_00016961 | mRNA | upstream | 63533 | 21711671 ~ 21717167 (+) | False | XLOC_008472 |
| TCONS_00016959 | mRNA | upstream | 65264 | 21707900 ~ 21715436 (+) | False | XLOC_008472 |
| TCONS_00016957 | mRNA | upstream | 107248 | 21672700 ~ 21673452 (+) | True | XLOC_008471 |
| TCONS_00016967 | mRNA | downstream | 32278 | 21862295 ~ 21871471 (+) | False | XLOC_008475 |
| TCONS_00016968 | mRNA | downstream | 32356 | 21862373 ~ 21872824 (+) | True | XLOC_008475 |
| TCONS_00016969 | mRNA | downstream | 52402 | 21882419 ~ 21943563 (+) | True | XLOC_008476 |
| TCONS_00016970 | mRNA | downstream | 117100 | 21947117 ~ 21981546 (+) | False | XLOC_008477 |
| TCONS_00016973 | mRNA | downstream | 184012 | 22014029 ~ 22024954 (+) | True | XLOC_008479 |
| TCONS_00016964 | other | upstream | 10691 | 21767524 ~ 21770009 (+) | True | XLOC_008473 |
| TCONS_00016960 | other | upstream | 65035 | 21711660 ~ 21715665 (+) | False | XLOC_008472 |
| TCONS_00016955 | other | upstream | 332900 | 21447656 ~ 21447800 (+) | True | XLOC_008467 |
| TCONS_00016954 | other | upstream | 342741 | 21437876 ~ 21437959 (+) | True | XLOC_008469 |
| TCONS_00016953 | other | upstream | 342972 | 21437633 ~ 21437728 (+) | True | XLOC_008468 |
| TCONS_00016972 | other | downstream | 173065 | 22003082 ~ 22003196 (+) | True | XLOC_008478 |
| TCONS_00016979 | other | downstream | 584107 | 22414124 ~ 22414253 (+) | True | XLOC_008485 |
| TCONS_00016984 | other | downstream | 892665 | 22722682 ~ 22762438 (+) | False | XLOC_008489 |
| TCONS_00016986 | other | downstream | 892695 | 22722712 ~ 22733033 (+) | False | XLOC_008489 |
| TCONS_00016990 | other | downstream | 1548054 | 23378071 ~ 23378188 (+) | True | XLOC_008494 |
